Trichosurus vulpecula (common brushtail): 118842986
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Entry
118842986 CDS
T10126
Symbol
EDC4
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118842986 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118842986 (EDC4)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118842986 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
118842986 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
DUF445
Sey1_3HB
Motif
Other DBs
NCBI-GeneID:
118842986
NCBI-ProteinID:
XP_036606239
LinkDB
All DBs
Position
3:380325133..380344060
Genome browser
AA seq
1393 aa
AA seq
DB search
MASSCTSIDIEDATQHLRDILKLDRPPGGSGTESQRTSSSYNGDLNGLLVPDPLSSGDAT
VLSKPSHRGAPLASLEEKQVICLSGDDSSTCIGISAKEVEIVASSDSNISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRGASNGSAMVRVISVSTAERTLLKGFTGSV
ADLAFAHLNSPQLACLDESGSLFVWRLAMENNKIQEEIVVNIKRSEGTPLNHFRRIIWCP
YIPEENEESSEEGSQTLALLHEDRAEVWDLDILRANNSSWPVDVNHIKEGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFCPDIFSSVSVPPSLKACLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRAYFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEEGDSLSAEGSHGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPQQSPDVVAPLPSHS
AREDFGFGEHLPELNSESLASGQGSGQGSQPDLRRIADLPVPSDFLSLTNEAKPKLMTPD
AFMTPSASLQQITVSPGSSGSSLTAVTSLNTTSATDTTMPRPSEELTLSPKLQLDSSLTL
SSSSSSLQASPRGHSVLIPGLSDKLATKGPSQVPQGNPSLSLELQEVEPLVVPQASPTRA
RSPDVISSASTALSQDIPEIASEALSRGFGTTAPEGLEPDSMASAASALHLLSPRPRPGP
EHGPQHSLDGSPGEGEKRSTPSLLETALSQETSAADSKAWPAAPDITRETRNSLADSPRD
DVQEKHKGSSYHRHAYHLLQQDSQDASAEQSDHDDEVASLASTSGGFVAKATAPRLPVKD
WKTKGSPRASPKLKRKGKKDDGDLAQGPWLVEHQAAEAPEEWLALVRGQQRELAELRQSH
AELLQRLTDQLDSVQSSLMGHVERVLESRQEHEQRRLERALAEGQQRSGQLQEHLSQQLS
QALSSAVAGRLERTVREEMKKTIPQCVSKSLEPVTSQLSGTVAAKLTAVEGTLKENVTKL
VKSKNLTDTIARAAADTLQGPMQAAYREAFQSIVLPTFEKSCQAMFQQINDSFKLGTQEY
LQQLENHMKSRKAREQEVREPVLAQLRGLVGTLQSATEQMAASVSSSVRAEVQHQLHIAV
SNMQESILSQVQRIIKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPIPAAHLDCQAQQAHI
LQMLQQGHLNQAFQQALTAADLNLVLFVCETVDPQQVFGQPPCPLSQPVLLSLIQQLSSD
LGTRTELKFSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLSKSARRL
TIMLQGLAVPSLN
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtcctgcaccagcatcgacatcgaggacgccacgcagcatctgcgggacatc
ctgaagctggaccgtccgcccggaggctcaggcacagagagccagcggacatccagctcc
tacaatggagatctaaatggacttctggtgccagaccccctttcttctggtgatgcaact
gtactgtctaaaccgagtcacagaggagcacccttggccagcctggaggagaagcaggtc
atctgtctttctggagatgacagctccacttgcattgggatttcagccaaggaggtagaa
atagtggctagcagtgactccaacatctccagcaaggctcgggggagtaacaaggtaaaa
atccagccagtggccaagtatgactgggaacagaaatactattacggcaacctgatcgct
gtgtctaattccttcttggcgtatgccatccgaggtgccagcaatggttcagccatggtg
cgggtgatcagcgtcagcacggcagagcgcacactgctgaagggcttcacaggaagtgtg
gccgatttagcctttgctcacctcaactccccccagctggcctgcctggatgaatcgggc
agcctttttgtgtggcgcctggccatggagaacaacaagatccaagaggagattgtggtg
aacattaagcgttcagagggcacaccattgaatcacttccgaaggatcatctggtgtcca
tatatcccagaggagaatgaggaaagcagtgaggagggcagccagactctggccctgcta
catgaagacagggctgaggtgtgggacctggacattctccgagccaacaacagctcctgg
cctgtggatgtcaaccacatcaaagaaggcttcattgtggtgaagggccatagcacgtgc
ctgagtgaaggagctctctctcccgatgggactgttttagccactgcaagtcatgatggc
tttgttaagttctggcagatctatatagagggccaagatgagccaaggtgtctgcatgaa
tggaaacctcatgatggcaggcctctctcctgccttctgttctgtgacaaccacaagaaa
caagaccctgaagtccccttctggaggttcctcatcacaggagctgaccaaaaccgggaa
ctgaagatgtggtgcacagtgtcatggacctgcttgcagaccatccgcttttgtccagac
atatttagctcagtgagtgtgcctccaagcctcaaagcctgcctggacctttcagctgaa
tacctgatcctcagtgatgtacagagaaaggtgctgtatgtgatggagctgctgcagaac
caggaggagggcagggcctacttcagttctatctctgagttcctgctcacccaccctgtg
ctgagctttggcattcaggttgtgagccgctgccggcttcggcacacagaggttctccca
gctgaggaggagggtgatagcttgagcgcagagggctcccatggtgctggggcagtggag
tcagcagctggtgtacttatcaagctcttctgtgtccacaccaaggccctgcaggatgtc
cagatacgcttccagccccagcagagccctgacgtggtggccccactgccttcccactcg
gcccgagaagacttcgggtttggagagcacctgccagagctgaactcggagagtctggcc
tctggccagggttctggccagggctctcagcctgaccttcggcgtatcgctgacctgcct
gtcccttccgactttctcagcctgactaatgaggccaagcccaagctcatgactcctgat
gccttcatgactccgagcgcctctctgcagcagatcacagtgtcccctggaagcagtggg
agttctttaacagccgtgacatccttgaataccacctcagccacagacacgaccatgccc
aggccttctgaggagctgaccctgagccccaagctgcagctagacagcagtctgaccctg
agcagcagcagtagcagtcttcaggctagtccccgtggccacagcgtcctcatcccaggc
ctctctgataaactagctaccaaagggcccagccaggtcccacaagggaacccatcactg
tccttggagctgcaggaggtagagcccctggtggtgccacaggcttctccgacccgggcc
cgctcccccgacgtcatctcctcagcctccacagccctgtcccaggacatccctgagatt
gcctccgaggctctgtcccgagggtttggcaccactgctccagagggccttgagcctgac
agtatggcatctgctgcctcggccctgcacctgctatccccacggcctcggcctggccct
gagcacggcccccagcacagcctggatgggagtcctggggagggcgagaagcggagcacg
ccgtccttgctggagacagcgctgagccaggagaccagtgctgcagacagcaaggcctgg
cctgccgcacctgatatcacccgggaaacccgcaacagcctggccgacagtcccagggat
gatgtgcaggagaaacacaaaggctcttcctatcacaggcatgcctaccatctgctgcaa
caggacagtcaggatgccagtgctgagcagagtgaccatgatgatgaggtggccagcttg
gcctcaacctcaggtggctttgttgccaaagcgacggccccaagactgccagtgaaggac
tggaaaaccaaggggtctcccagggcctcacccaagctgaagagaaagggcaagaaagac
gatggggacttggcacaaggcccctggctggtagaacaccaggcagcagaagctcctgaa
gagtggctggccctggttcgagggcagcagcgggagctcgccgagctgcggcagagtcac
gccgagctgctgcagcggctgacagaccagttggactcagtgcagagctctctcatgggc
catgtggagagagtcctggaatctcgacaagaacatgagcagagacggttagagcgggcc
ctggctgaggggcagcagcgcagcggacagctgcaggaacacttgtcacagcagttgtct
caggccctgtcctcggccgtggcaggccggctggagcgcacggttagagaggagatgaag
aaaacgattccccaatgtgtctccaaaagcttggagccagtgacaagccagctgagtggc
accgtggcggccaagctgacagcggtagaaggcaccctcaaggagaatgtcaccaagctg
gtcaagtccaagaacctgactgacacgatcgcccgtgcagcagcagatactctacaggga
cccatgcaggctgcctaccgagaggccttccagagcattgtgctgcccacttttgagaag
agctgccaggccatgttccagcagatcaatgacagcttcaagctgggtacccaggaatac
ctgcagcagttagagaaccacatgaagagtcggaaggcaagagagcaggaagtgcgagag
ccggtgctggcgcagcttcgaggcctggtgggcaccttgcagagtgccacagagcagatg
gcagcctctgtgagcagcagcgtgcgggccgaggtccagcaccagctccacattgccgta
agcaacatgcaggagtcaatcctctcccaggtccagcgcattatcaagggggaggtgagc
ctggccatgaaggagcagcaagcagcggtcacttccagtatcatgcaggcaatgcgctct
gctgccggcacacccatcccagctgcccaccttgactgccaggcccagcaggcacacatc
ctgcagatgctccagcaggggcacctcaaccaggctttccaacaggccctgacagcagct
gacctgaacctggtgctctttgtgtgtgagactgtggacccacagcaggtgtttggccag
ccaccttgtcccctgtcccagcctgtcctgctctccctcatccagcagctctcctctgac
ctgggaacccgcacagagctcaaattcagctacttggaagaagctgtaatgcacctggac
catagtgacccgatcaccagggaccatatgggctcagtcatggcccaggtacggcagaag
ctattccagttcctacaggctgagccccacaactcgctcagcaagtccgcccggcgtctc
accatcatgctgcagggcctggctgtccccagcctcaactag
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