Trichosurus vulpecula (common brushtail): 118843322
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Entry
118843322 CDS
T10126
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03013
Nucleocytoplasmic transport
tvp05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118843322 (NUP188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
118843322 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118843322 (NUP188)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118843322 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
118843322
NCBI-ProteinID:
XP_036606799
LinkDB
All DBs
Position
3:162318430..162359777
Genome browser
AA seq
1745 aa
AA seq
DB search
MAAAAGGLCVRSSRELWTILLGRSALRELNQIESELNKHWQRLLEGLSYYKPPSASSAEK
VKANKDVAPPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQA
LILKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYSECVDKLEKELVTKYRQQFEEL
YKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMVPSDLLLLTKMFK
AQGFGCRQTNRHLVDESMDPFVDRIGYFSALILVEGMDIDSLHKCALDDRTELHQFAQDG
LICQNMDHLMLTLGDIPHHAPVLLAWALLRHTLNPEETSSVIRRMGSTAIQLNVFQYLTR
LLRSLASGGNNCTTSTACMCIYGLLSFVLTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKH
RPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVISPPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMSQMISAEGMNA
GGYGNLLMNSEQPQGEYGVTIAFLRLITTLVKGQLGSTQSQGLAPCIMFVLKEMLPSYHK
WRYNAHGVREHIGCLILELIHAILNLCHESDVHSSHSPSLQSLCICSLANTEAGQAVINI
MGIGVDTIDMVMAAQPRCDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDA
FLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGNDGSKEFSLGEWSCLQ
VVLELIDSKQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGT
LSPPSETSEPSVLETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKRFAYWSGYIK
SLADHMAETEGSGCTSLVEYQMLISAWRMLLIIATSHADIMHLNDSVVRRHLFLDVLAGT
KALLLVPTSVNCLRLGSMLCTLLLILLRQWTRDLGSVDEILSSLMEILEGILQADQQLME
KAKAKVFSALLTVLQMKELKVSEITQYSQLVLNVCETLQEEVIALFDQTRHSLASGNVSE
DKDSMETDDCSRLRHKDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRIPILPTLFTTL
EVSLRMKQNLHFTEASLHLLFTLARTQQGAAAVAGAGITQSICLPLLSVYQLSTNGTVQT
PGASRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTV
QSLACLEEADHTVGFILQLSNFMKEWQFHLPQLMRDIQVNLCYLCQACTSLLHSRKMLQH
YLQNKNGSDAMPSAVTPRVQRPPQPSSSKQPNPDGEAAEQRALRMVQYSLLKILSKTLAA
LRHFTPDVCQILLDQSLDLAEYNILFALSFTTPTFDSDVAPSFGTLLATVNVALNMLGEL
DKKKEPLSQAVGLSTQVEGIRTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRMK
QELSSELSTLLSSLSRYFRRGAPTSPAAGVLPSPQGKPASASKAGPESQEPLIQLVQAFV
QHVQR
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccgccggcgggctctgtgtgaggagcagtagagaactgtggaccattctg
cttggaagatcagctctgagagaactaaatcagatcgagtcagagttgaataaacactgg
cagcggctgctagagggactttcatactacaaacctcccagtgcaagttcagcagaaaaa
gtgaaagctaataaagatgtggctccaccactgaaggaactggggctgagaatcagcaaa
tttttgggccttgatgaagagcagagtgtgcagttacttcagtgttaccttcaagaggac
tatcggggaacccgggactcactaaagacggtactgcaagatgagaggcagagccaggct
ctgatcctgaagattgcagattattactatgaagaaaggacctgtattctacgttgtgtc
ttgcatttactcacttatttccaggatgagaggcatccctaccgggttgagtactctgaa
tgtgttgataagttggagaaggagctggtcacaaaataccggcaacagttcgaggagctc
tacaaaacagaggcaccaacgtgggaaacacatggaaatctcatgactgaacgccaagtg
tcccgatggtttgttcagtgcctgcgggagcagtcaatgctgctggaaataattttcctt
tattatgcctacttcgagatggttcctagtgacctgctgctattaaccaagatgttcaaa
gcacaagggtttggttgtaggcagaccaacagacatttggtggatgagagcatggatcct
tttgtggatcggattggatacttcagtgcccttatcctggtggagggaatggatattgac
tctttacataaatgtgctttggatgacaggacagagctccatcagtttgcccaggatggg
ctgatatgtcagaatatggaccacctgatgttgaccttaggggacatccctcatcatgcc
cctgtgcttttagcctgggctttactccgtcacaccttaaacccagaagaaaccagcagt
gtcatcaggaggatgggcagcacagccatccagctcaatgtttttcagtacctaacacgg
ctgctccgctcactagccagtggaggaaataattgtactaccagtactgcttgcatgtgc
atctatggactgctttcttttgttctcacctcactggagttacacacattaggcaatcag
caagatgtcattgacacagcatgtgaagttctagcagacccttctcttccagaactcttc
tggggaacggaaccaacttctgggctagggatcatcctggacagtgtgtgtgggatgttc
ccgcatctcctctctcctcttttgcagttgctcagagcccttgtatcagggaaatccaca
gccaaaaaggtatatagtttcctggataaaatgtctttctacaatgaactttataaacat
aggccccatgatgtgatctcacacgaagatgggaccctctggcggaggcaaacaccaaaa
ctcctttaccctcttgggggtcagaccaatcttcgtatacctcagggcacagtgggtcag
gtaatgctggatgaccgggcttacctagtacgctgggaatactcctacagcagttggact
ctgttcacttgtgagattgaaatgctactgcatgttgtatcaacagcagatgtgattcag
cactgccagcgggtcaaacctatcattgacctggttcacaaagtcatcagcactgatttg
tccatagctgactgtctcctgccaatcacatcacggatctatatgttgctgcagaggtta
acaactgtgatctctcctcctgtggatgtcattgcttcctgtgtcaattgtttgactgta
ttagctgcccggaatccagctaaggtctggactgatcttcgccacacagggtttctgcca
tttgtagctcatcctgtctccaatatgagtcagatgattagtgctgagggaatgaatgca
gggggctatggaaacctcttgatgaatagtgagcagccacaaggtgaatatggagttacc
attgcctttctgcgcttaatcaccactcttgtcaaggggcagcttggtagcacccagagc
caagggctggccccttgcatcatgtttgtactgaaggagatgcttcccagctatcataag
tggcgttacaatgcccatggagtgagagaacatattggttgtctgatccttgagctgatc
catgcaattctgaatctctgccatgagtccgatgttcacagcagccattctcccagttta
cagtctctgtgcatctgcagcctagccaacactgaagctggccaagcagtcatcaacatc
atgggcattggtgtagacaccatcgacatggtgatggcagctcagcccaggtgtgatggg
gcagagggccaggggcaaggccagctacttatcaagacagtgaaactggcattctcagtg
accaacaatgtcattagactgaaacctccttccaatgtggtatctcccctggaacaggca
ctcactcagcatggtgcccatgggaacaaccttattgctgttttggccaaatacatctat
cacaaacatgaccctgccttgccacgactagccatccagctcctgaaacgcttggcaacg
gttgccccgatgtccgtgtatgcctgccttggcagtgatgcagctgctatccgggatgct
tttctgaccaggctgcagagcaagattgaggatatgcgaatcaaggtcatgatcctagag
tttcttactgttgccgtggagacccaacctggcctcattgagctctttctgaaccttgaa
gtgaaggatggaaatgatggctccaaggaattcagtctcggagaatggagctgtctccag
gtggtactagagttaattgattcaaaacagcaagatagatattggtgtccacccctgctt
catcgtgctgcaatagcttttctacacgccctgtggcaggaccgccgggacagtgccatg
ttggttctcaggaccaaaccaaagttttgggagaacttgaccagcccgttatttgggact
ctttctcctccctcagaaacatctgagcccagtgtcctggagacctgtgccttaattatg
aagatcatttgtttggagatatactatgtagttaagggttcactggaccagtccctaaaa
gatacactcaagaaattctccagtgagaagcgttttgcctattggtcaggttatatcaaa
tctttggcagatcacatggcagagacagaaggcagtggctgcacttctttggtggagtac
caaatgttaatctctgcctggaggatgcttctcattattgccaccagccatgcagatata
atgcatttgaatgattctgttgttcgacgtcacctgtttcttgatgtgcttgctgggacc
aaagcattactgctggtcccaacatcagtgaactgccttcgcctgggatccatgctgtgt
actctgctgcttatcttacttcggcagtggacgagagatttgggttctgtggatgaaatc
cttagctccctgatggagattctggagggaatcctacaggcagaccaacagctaatggaa
aaggctaaagccaaagtgttctcagccctcctcactgtcctccagatgaaagagttgaaa
gtgagtgagatcacacaatactcccagctggtgctaaatgtctgcgagactcttcaggaa
gaagtgattgccctctttgaccagacccgtcacagcctagcctctggcaacgtatcagaa
gacaaggacagcatggagacggatgactgctcacggcttcggcacaaggaccagcgggat
ggggtgtgtgtcctgggcctacacttggccaaagaactatgtgaagtggatgaggatgga
gactcttggctgcaggttacccgtaggatccctattctgcccactctgttcactaccctg
gaggtgagcctgagaatgaagcaaaacctgcactttactgaggcttcactgcatcttctg
ttcacattggcccgaactcagcagggtgcagcagctgtggctggagctggcatcacccag
agcatctgtttgcccctcctaagtgtgtaccaactcagcaccaatggaacagtacagact
cctggtgcttctcgaaagtcccttgatgccccgtcttggcctggcgtctaccgcctgtcc
atgtccttgatggaacgtctgctgaaaaccctacgttataatttcctgactgaagccctg
gactttgtgggtgttcatcaagagcggattctgcagtgcctcaatgcagtaaggacagtg
cagagtttggcctgcctagaggaagctgatcacactgtaggctttatcctacagctctcc
aatttcatgaaagagtggcagtttcatctgccacagctcatgagagacatacaggtaaat
ctgtgttacctgtgtcaggcttgcacctccctcctgcacagccgcaagatgctgcagcac
tatttacagaacaaaaatggaagtgatgccatgccctcagctgtgactcctcgagtccaa
cgtcccccccagccctcgtcctcaaagcagcctaaccctgatggtgaggctgctgaacaa
agggccctgcgcatggtccagtatagcctcctgaaaattctcagcaagacgctggccgcc
ctgcgccacttcacccctgatgtctgccagatccttttggaccagtccctagaccttgcc
gaatacaacatcctttttgccctgagcttcacaaccccaacctttgactctgatgtagcc
ccctcttttgggactctcctggccacagtgaacgtggccctcaacatgttgggagagttg
gacaagaaaaaggaacccctgtcccaggctgtggggctgagcactcaggtggaggggatc
agaacgctcaagtccctcctgatgtttacaatggaaaattgcttctatctgctcatctcc
caggctgtacgctacctgagggacccagctgtgcaccccagggacaaacagcgaatgaag
caggagctcagctcagaattgagtacattgctttccagcctttcccgttacttccgccgt
ggagctcccacttccccagctgctggagtccttccttcacctcaaggcaagccagcttca
gcttccaaagcaggccccgagagccaggaacctctgattcaactagtccaggcctttgtt
cagcatgtgcagagatag
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integrated database retrieval system
