Trichosurus vulpecula (common brushtail): 118846245
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Entry
118846245 CDS
T10126
Symbol
SMG5
Name
(RefSeq) protein SMG5 isoform X1
KO
K11125
protein SMG5
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118846245 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118846245 (SMG5)
03032 DNA replication proteins [BR:
tvp03032
]
118846245 (SMG5)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118846245 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
118846245 (SMG5)
DNA replication proteins [BR:
tvp03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
118846245 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
118846245
NCBI-ProteinID:
XP_036610458
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All DBs
Position
4:161197693..161229508
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AA seq
1016 aa
AA seq
DB search
MSQGPPAADSSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
LSRYQNELAGVDTEQLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLFDKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVSFMYLQSLLQP
KSSTLDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYENGYSFLPDLLIFRMVI
ICLMSVHSLKRAGSKQYSAAIAFTLAFFSHLINHVNIRLQAELEEGENPVPAFQSDGTDE
PEPKEPLEKEVEPEPEPPPPAPRVGEAKKSRKFSRLSCLRRRRHHPPKAGDDSDLSEGFD
SDSSHDSARASEGSDSGSDKSDEGGGTAFDAETDSEMNSQESRSDLEDMEDEEGTRPMAP
DPPRSRPEASDPSNGPLGPNEASIASNLQAMSTQMFQTKRCFRLAPTFSNILLQPSNETR
TTAGNRACINGDLDKSEPASDDGSESEESVSSGRSCHNERSIHEKLRILMAEGLLPAVKV
FLDWLRTNTDLIIMCAQSSQSLWNRLSVLLNLLPAAGELQEPSLVLCPEVQDLLLGCEQP
DLPTSLLLPEDTALRNLPPLRTAHKRFNFELDRPLLSPMEESVVRICCIRSFGHFITHLQ
GSILQFNSEVGIFISIAQAEQENLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
EGSLQQPKAQSAMSPYLVPDTQALCQHLPIIRQLASSGRFIVIIPRTVIDGLDLLKKEHP
GARDGIRYLEAEFKKGNRYIRCQKELGKSFERHKLKRQDIDAWTLYKILDNCKQLTLAQG
IGEDDPSGMVTIITGLQMDNPSTFTSSMQAAIQAATHASVEIKNVLDFYRQWKEIG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggcccccccgcagcggatagcagtgagcccgaggccaaggtcctgcatact
aagcggctttaccgggcagtggtggaggctgtgcatcgacttgacctcatcctttgcaac
aaaactgcttaccaagaagtgttcaaaccagagaacattagcctaaggaacaagcttcgt
gaactctgtgtcaagcttatgttcctgcatccggtggattatgggaggaaagcagaggag
ctactgtggaggaaggtgtactatgaggttatccagcttatcaagaccaacaaaaagcac
atccacagccggagcaccttggaatgtgcctacaggacacacctggttgctggtattggc
ttctaccagcatctcctcctctacatccagtctcattaccagcttgaactgcagtgctgc
attgactggactcatgtcaccgaccctctaataggttgtaagaagccagtatctgcctca
gggaaagagatggactgggctcagatggcttgccaccgatgtctggtgtatctgggagat
ttgtcccgatatcagaacgaattagctggtgtggacacagagcaactggctgagagattc
tattaccaagccttgtcagtagctccccagataggtatgcccttcaatcagctgggtacc
ctggcaggcagcaagtattacaatgtagaagccatgtactgctacctgaggtgcatccag
tcagaagtgtcctttgaaggggcttatgggaacctcaaacggctgtttgacaaagcagcc
aaaatgtaccaccagctgaagaaatgtgagacgagaaaactgtctcctagcaagaagcgg
tgtaaggatatcaagaggctgctggtgagcttcatgtacctgcagagtcttctgcagccc
aagagcagcaccctggactcggagctgacatcactctgccagtcagtcctggaggacttc
aacctttgtctcttctacctgccctcttcacccaacctcagtctggctagtgaggatgag
gaagaatatgagaatggctattcttttctccctgaccttctcatcttccgtatggtcatc
atttgcctcatgagtgttcacagcttgaagagagcaggatcaaagcagtacagtgctgcc
attgccttcaccctggctttcttctcccatcttatcaaccacgtcaatatccggctacaa
gcagagctggaagagggagagaatcctgtgccagctttccagagtgatgggacagatgag
cctgagcctaaagaaccactggaaaaggaggtggagccagagccagagcctcctccccca
gcaccaagagtgggtgaagccaagaagagtcgtaagttctcccgcctgtcttgccttcgt
cggagacgccaccacccacccaaggctggtgatgacagtgacctaagtgaaggctttgac
tcagattcaagccatgattcagcccgggccagtgaaggttcagacagtggctcagataaa
agtgatgagggtgggggtacagcttttgatgcagagacagactcagagatgaacagccag
gagtcacgctcagacctggaggacatggaagatgaggaaggaacacggcccatggctcca
gaccctcctcggtctaggccagaagcttctgacccctccaatggcccattgggtcctaat
gaggccagtattgccagtaacctgcaagccatgtccactcagatgttccaaaccaaacgc
tgcttccgattagcccccaccttcagtaacatccttctacagccttctaatgagactcgg
accactgctggtaacagggcctgcatcaatggggacctagacaaatctgaaccagcatct
gatgatggatctgagtcggaggagagcgtgtccagtggacgctcctgtcacaatgagagg
agtatccatgagaaacttcgcatcttgatggcagaaggacttcttcctgctgtgaaagtc
ttcttggattggcttcggaccaacacagacctcatcatcatgtgtgcacagagctcccaa
agcctatggaatcgcctctctgtgttactgaacctcctaccagctgctggagaactccag
gagcccagcctggtcttgtgtcctgaggtacaggatctccttctgggctgtgaacaacct
gaccttcccacttccctgctgcttccagaagacacagctctccgcaacctacccccactc
cgaactgcccataaacgcttcaattttgaactggatcgaccattgctcagtcccatggag
gagtctgtcgtgcgaatctgttgcatccgtagctttggccacttcattacccatcttcaa
ggcagcatcctgcagtttaactctgaggttggcatctttatcagtattgctcaggctgag
caagagaatctgttgcagcaggctcaggcccagttcaggatggcacaggaagaggctcgt
cggaatcggctgatgagagacatggctcaacttcggctgcagctcgaggtatcccagctg
gagggcagtttgcagcagcccaaagctcagtcagcgatgtccccataccttgtccctgac
actcaggctctctgccagcacctccccatcatccgccagctggccagcagtggcaggttc
attgtcatcatccctaggacagtgattgacggcttagacttgctgaagaaggaacatccg
ggagctcgggatgggatcagatatctggaagccgagtttaaaaaaggaaacaggtacatt
cgctgccagaaagagttggggaagagttttgagaggcataaactgaagaggcaggatata
gatgcctggaccctctataagatcctggacaattgcaaacaactgactctggcccaggga
attggagaagatgatcctagtggcatggtgaccatcatcactggtcttcagatggataat
cccagtactttcactagctccatgcaggcagcgatacaagcagccacccacgccagtgtt
gagatcaagaatgtgctggacttctacaggcagtggaaggagattggctga
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integrated database retrieval system
