Trichosurus vulpecula (common brushtail): 118848239
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Entry
118848239 CDS
T10126
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03013
Nucleocytoplasmic transport
tvp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118848239 (UPF1)
03015 mRNA surveillance pathway
118848239 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118848239 (UPF1)
Enzymes [BR:
tvp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118848239 (UPF1)
5.6.2.5 RNA 5'-3' helicase
118848239 (UPF1)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118848239 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118848239 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118848239
NCBI-ProteinID:
XP_036612954
LinkDB
All DBs
Position
1:56412028..56472692
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AA seq
1131 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGGGGGA
GGPGAAGVGGAAGQLDAQVNGPDGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDL
PVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGE
TVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCF
LSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYED
AYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLV
IIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTH
NFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQG
LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAV
DQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGEL
SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM
VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPA
LSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNR
TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD
AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH
LLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVY
DRSSQGRPSNMYFQTHDQIGMISTGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAG
RGTPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQM
SQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacactgaggag
gccgagctgctgggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagacgcccccagggggacccggcggcggcggaggaggcggcggcgcg
ggtgggcccggagccgcgggcgtcgggggagccgcgggccagctcgacgcgcaggttaac
ggacctgatggtatcctacagaatggtgctgtggatgacagtgtagctaaaactagtcaa
ctgttggctgaactgaattttgaagaagatgaagaagatacttactatacaaaggatctc
cctgtgcatgcttgcagttactgtggcatccatgacccagcttgtgtggtttactgcaat
actagcaagaaatggttttgtaatggacgtggaaacacttctggcagccacattgtaaat
caccttgtaagagcaaaatgcaaagaggttactctccacaaggatgggcccctgggggag
acagtgctggagtgttataattgtgggtgtcgaaatgtgtttctcctgggcttcatacct
gccaaagctgattcagttgtggtgctcctctgcaggcaaccctgtgccagtcagagcagc
ttaaaggacatcaattgggacagctcccagtggcagcctctgatccaagatcgctgcttt
ctttcctggctggtaaagattccttccgagcaggagcagctgagagcacggcagattaca
gctcaacagatcaacaaactagaggagctttggaaggaaaatccttcagcaactctggaa
gatctggaaaagccaggcgttgatgaggaaccacagcatgtcttgctgcgctatgaggat
gcttaccagtaccaaaatatttttggcccacttgtcaaactggaagcagattatgataag
aaacttaaagaatctcagacccaagataacatcacagtcagatgggacctgggcctcaac
aagaagagaatcgcttacttcactttgcccaagactgactctggtaatgaggatttagtc
ataatttggttgagagatatgcgtcttatgcagggagatgaaatctgccttcgctataaa
ggtgacctcgctccactgtggaagggaattggccacgtcattaaggtcccagacaattat
ggagatgaaattgcgattgaattgaggagtagtgttggagcccctgtagaagttactcat
aacttccaagtggattttgtgtggaagtccacttcatttgacagaatgcagagtgcatta
aaaacatttgctgtggatgaaacctcagtatctggctacatttaccacaaactgttgggt
catgaagtggaggatgtgattattaaatgccagctgccaaaacgttttacagcacaagga
ctcccagacctcaatcattctcaggtatatgcagtaaagactgttttgcaacgacctttg
agcctcatccagggaccacctggtacagggaagactgtaacatcagctacaattgtctac
catttggctaggcaaggcaacgggcctgtgctggtttgtgcaccaagcaatatagctgtg
gatcagctgactgagaagattcaccagaccggactgaaagttgttcgtctttgtgctaaa
agccgggaagcaattgattctcctgtatcttttttggcactgcacaaccagatcaggaat
atggatagtatgcctgaactccagaaattacaacagctgaaagatgaaacaggcgaactt
tcatccgctgatgaaaagcgttatcgagcattgaaacgcacagctgaacgagaattgctc
atgaacgcagatgtgatctgctgcacgtgcgtgggagcaggtgatccaaggcttgccaag
atgcaattccgatccattttaattgatgaaagcacacaggctacggaaccggagtgtatg
gtgccagttgttcttggagccaaacagttgatccttgtaggagatcattgccagctgggt
cctgtagtcatgtgcaagaaagctgcaaaagcaggcttgtctcagtcgctgtttgagcgg
ctggtggtgttggggatccgtccaatccgcctgcaagtccagtatcgaatgcatcctgct
ctcagtgctttcccatcaaacatcttttatgagggttcccttcagaatggtgtcactgca
gctgatcgtgtgaaaaagggatttgatttccagtggccccagccagataaaccaatgttc
ttttatgtgacccagggccaagaagaaattgccagttcgggcacctcttatttgaacaga
acggaagcagcaaatgtggaaaagataactacaaagctcctaaaagccggtgccaagcca
gatcaaattggtattattacaccttatgaaggtcaacgatcttacctggtacaatacatg
caatttagtggctccctacatacaaaactctaccaggaagtggaaatagctagtgtcgat
gcgttccagggaagagaaaaagacttcatcattctttcctgtgtgagagccaatgagcac
caaggaattggatttttaaacgatcccaggcgtcttaatgtggctcttacccgagcaagg
tatggagtaattattgtcggtaaccccaaagctctctccaagcaaccactttggaaccat
ctattgaactactacaaggaacagaaagtattggtagaaggacccctaaacaacctccgg
gagagccttatgcaattcagcaagccccgaaaacttgtcaataccatcaacccaggagcc
cggttcatgactactgccatgtatgatgcacgtgaagctattatcccaggatctgtctat
gaccggagcagtcaaggacgtccatcgaacatgtattttcaaactcatgatcagatcggg
atgatcagcaccggacccagtcatgtcactgctatgaacattcctattcctttcaacctt
gtgatgccaccgatgccaccaccaggctatttcggtcaagccaatggaccagctgcaggc
cgtgggacaccaaaagggaagactggtcgtgggggacgccaaaaaaatcgctttgggatt
cctggaactagccagtcgaatcttcccaatagtcaggccagtcaagacgtggtatctcag
cccttctcccagggtccattgactcaaggttatatttccatgagtcagccatcacagatg
agccagccggggctctcccaaccagaattatcccaggacagctaccttggtgatgagttt
aaatcgcagattgatgtggctctgtcacaagactctacataccaaggagaacgggcatac
caacatggtggagtgacagggctgtcacagtattag
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integrated database retrieval system
