Trichosurus vulpecula (common brushtail): 118848722
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Entry
118848722 CDS
T10126
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118848722 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tvp01009
]
118848722 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tvp04515
]
118848722 (PCDH20)
Protein phosphatases and associated proteins [BR:
tvp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118848722 (PCDH20)
Cell adhesion molecules [BR:
tvp04515
]
Cadherins
Protocadherins
118848722 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
DUF2967
CbtA
Motif
Other DBs
NCBI-GeneID:
118848722
NCBI-ProteinID:
XP_036613633
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All DBs
Position
4:complement(318621921..318627249)
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AA seq
972 aa
AA seq
DB search
MTAVSLGMNCPGNERRSRTLGVSWLPGNRQQPLDMGHLYGHRSSTSRRNLPHLLLFFLFV
GPFNCFASYSRATELFYSLNEGLPAGVFIGSLAEDLQLVPQAASAEAAVAAGSEEDQQSH
QHHHHREEWDPPLSFSLASQGLGGQYVTLDNRSGELHTSEQEIDREALCLEGGGGGGGGG
GGRNGISVSSSPSSESCVLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQIAVSVP
ENAPVNTRLAIEHPALDPDVGINGVQTYRLLDYHGVFTLDVEENENGERTPYLIVMGALD
RETQDQYVTIIIAEDGGSPPLMGSATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPV
ASVQAVDRDLGANAQITYSYSQKVPQVSKDLFHLDEITGVIKLFRKIGGNVLRLHKLTIL
ANGPGCIPAVITVLVTIIKVVFRPPEIVPRYIANEAEGVVYLKELEPINTPVAFFTIRDP
EDKYKVNCYLDGDGPFRLSPYQPYNNEYLLETAKSLDYETQQLYEITVVAWNSEGFHVRK
VIKIQVLDDNDNAPVFTQPLIELSIEENNAPNAFLTKLHAIDADSGERGQVSYFLGPDAP
SYFVLDKITGILTVSTQLDREEKEKYRYTVKAVDSGIPPQESIATVAITVLDKNDNSPRF
INKDFSFFVPENFPGFGEIGVISVTDADAGRNGWVALSVMNQSDIFVIDTGKGMLRAKVS
LDREQQSSYILWVEAVDGGEPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTL
PGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEETLMQNDYGLYR
LLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPEISIEEKEPQISIEPTHR
KVESASCVPTLVALSVISLGSITLVTGMGIYICLRKGKKHHRENDNLEVQVPLKGKIDLH
MIERKPMEISNI
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagtttcactgggaatgaactgcccagggaatgagaggcgctcacgaacccta
ggagtcagctggctgccggggaacaggcagcagcctctggatatggggcatctctacggt
cacagaagcagcaccagtcggaggaacctgccgcatctgttactgtttttcctcttcgtg
ggacctttcaactgcttcgcaagttacagtagagccacggagctcttctacagcctgaac
gaggggctaccggcaggagtgtttatcggaagccttgctgaggacctgcagctggtcccc
caggcagcatcagcagaagcagcagtggcagcagggagtgaggaagaccagcaatcgcac
cagcaccaccatcaccgagaggaatgggatccccctctttccttcagtttggcatcccag
gggctgggtggccagtatgtgaccctggacaaccgttcaggggagctgcacacttctgag
caggagatcgaccgggaggcactgtgtcttgaaggaggtgggggagggggaggtggggga
ggagggaggaacggcatctcagtctcctcctcaccttcctcagaatcctgcgtcttgctc
ctggatgtgctggtcctgcctcaggagtacttcagatttgtgaaagtgaaaattgccatc
cgagacataaatgacaatgctcctcagttccccgtgtcccaaatcgctgtatcagttcct
gaaaatgcacccgtcaacacccgattggccattgaacatccagccctggacccagatgtg
ggcattaatggggttcagacctatcgcctcttggactatcatggtgtctttaccttggat
gttgaggagaatgagaatggggagcgtaccccgtacctaattgtcatgggggcattagac
agggagactcaagatcagtatgtaaccatcatcatagcagaagatggtggctctccacct
ctcatgggcagtgccactctcacgattggcatcagtgatattaatgacaactgtcccctt
ttcacagactcacagatcaacgtgactgtgtatggaaatgctacagtgggcactcccgtg
gcgagtgtccaggctgtggatagagacttaggtgccaatgctcagatcacctactcctac
agccagaaggttccacaggtatcaaaagatttattccacctggatgaaatcactggagtc
atcaaactcttcagaaagattgggggcaatgttctccgactacataagctcaccatactt
gccaatggaccaggatgcattccggctgtaatcactgtcctagtgaccatcatcaaagta
gtttttcgtccacctgagatagttcctcgttatattgctaatgaagctgaaggagttgtt
tacttaaaggagttggaacccatcaacaccccagttgcattttttactatcagggaccca
gaagataaatataaggtgaattgctacctggatggagatggaccattcagattatctccc
tatcaaccatacaataatgaatacttgttagaaactgcaaagtctttggattatgagaca
caacagctctatgagataactgtggtggcctggaactctgagggatttcatgttagaaag
gtgattaaaatacaggttctagatgacaatgacaatgcacctgttttcactcaaccactg
atagaactatctattgaagaaaacaatgcaccaaatgcctttctgacaaagttgcatgcc
atagatgctgacagtggagaaagaggtcaagtttcttatttccttggacccgatgcacca
tcatattttgtattagacaagattacagggattcttactgtgtccactcagttggacaga
gaagaaaaagagaagtacaggtacacagtaaaagcagtcgactctgggataccgcctcaa
gagtcaatagccacggttgccatcactgttttggacaaaaatgacaacagccctaggttc
atcaacaaggatttcagcttttttgtgccagaaaatttcccagggtttggtgaaattgga
gtgatcagtgtcacagacgcagatgcgggacgaaatggatgggtcgccctttcagtgatg
aaccagagtgatatttttgtcatagacactggaaagggcatgttgagagcaaaagtctct
ctggatagagagcaacaaagttcctatattctgtgggttgaagccgttgatgggggtgaa
cctgccctctcttctactgcaaaaataacaatccttcttcttgacatcaatgacaaccct
cctcttgttctgtttcctcagtcaaatatgtcttatctattagtcctaccttctactcta
ccgggctcaccagttacagaagtctatgctgttgacaaagacactggtatgaatgctgtc
attgcttatagcatcataggaagaagaggtcctcggcctgaatcttttaggatagacccc
aaaactggtaacattactttggaagagacattgatgcagaatgattatgggctttaccgc
ttgctggttaaagtgagtgaccatggttatcctgagcccctccattctactgtcatggta
aatctattcgtcaatgacaccgttagcaatgagagctacattgagagtctattgcgaaaa
gaacctgagatcagcattgaggaaaaagaaccacaaatttcgatagaacctactcaccga
aaagtggaatcagcctcttgtgtgcccactttagttgccctatctgtgataagtttgggg
tccatcacattagtcactgggatgggaatatacatatgtctaagaaaggggaaaaagcat
caccgggaaaatgacaatttggaagtacaagtcccactgaaaggaaagattgacttacat
atgatagagaggaaaccaatggagatttctaacatttga
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