Trichosurus vulpecula (common brushtail): 118850394
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Entry
118850394 CDS
T10126
Symbol
COL1A2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp04151
PI3K-Akt signaling pathway
tvp04510
Focal adhesion
tvp04512
ECM-receptor interaction
tvp04518
Integrin signaling
tvp04611
Platelet activation
tvp04820
Cytoskeleton in muscle cells
tvp04926
Relaxin signaling pathway
tvp04933
AGE-RAGE signaling pathway in diabetic complications
tvp04974
Protein digestion and absorption
tvp05146
Amoebiasis
tvp05165
Human papillomavirus infection
tvp05205
Proteoglycans in cancer
tvp05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
118850394 (COL1A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118850394 (COL1A2)
04518 Integrin signaling
118850394 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118850394 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118850394 (COL1A2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
118850394 (COL1A2)
09152 Endocrine system
04926 Relaxin signaling pathway
118850394 (COL1A2)
09154 Digestive system
04974 Protein digestion and absorption
118850394 (COL1A2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
118850394 (COL1A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
118850394 (COL1A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
118850394 (COL1A2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
118850394 (COL1A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
118850394 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tvp00536
]
118850394 (COL1A2)
Glycosaminoglycan binding proteins [BR:
tvp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118850394 (COL1A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
118850394
NCBI-ProteinID:
XP_036615650
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All DBs
Position
5:234443..266721
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AA seq
1367 aa
AA seq
DB search
MLSFADARLWLLLAATWCLAAAQAVQETPKGRKGPRGDRGPRGQRGPPGPPGRDGEDGPP
GPPGPPGPPGLGGNFAAQYDPSKGLDMGPGPMGLMGPRGPPGASGPPGAQGFQGPAGEPG
EPGQTGPAGARGPPGPPGKSGEDGHPGKPGRPGERGIVGPQGARGFPGTPGLPGFKGIRG
HNGLDGLKGQAGAPGVKGEPGAPGENGTPGQAGARGLPGERGRIGGAGPAGARGSDGSVG
PVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGELGLPGMTGPVGPAGNPG
ANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPAGAAGASGPRGLAGEPGPAGSKGESGNKG
EPGSAGPQGPPGPSGEEGKRGPNGEPGSTGPTGPAGLRGVPGSRGLPGADGRAGGMGPPG
NRGASGPAGARGPNGDAGRPGEPGLMGPRGLPGSPGNAGPTGKEGPAGLPGADGRPGPTG
PAGNRGEPGNIGFPGPKGPNGDPGKSGDKGHAGLAGARGAPGPDGNNGAQGPPGPAGVQG
GKGEQGPAGPPGFQGLPGPSGPAGEGGKVGERGLPGEFGLPGPAGPRGERGPPGESGAVG
PTGSIGSRGASGPPGPDGNKGEPGVVGAPGSAGPAGSGGVPGERGAAGVPGGKGEKGETG
LRGDFGNPGRDGARGPPGAIGAPGPAGATGERGEAGPAGPVGPTGARGAPGDRGEAGPAG
PNGFAGPPGAAGQAGAKGERGTKGPKGENGAVGPTGPVGAAGPSGPNGPPGPVGGRGDGG
PPGATGFPGAAGRTGAPGPAGITGPPGPPGASGKEGPRGPRGDQGPLGRAGETGAVGPPG
FAGEKGPPGESGASGPPGSSGPQGLLGAPGILGLPGSRGERGLPGVSGALGEPGPLGIAG
PPGARGPPGGVGSPGVNGAPGEAGRDGNPGNDGPPGRDGLAGHKGERGYPGNPGAVGNAG
APGPHGTVGPAGKPGNRGEPGPAGSVGPVGPFGARGPSGPQGPRGDKGEVGDKGPRGLNG
LKGHNGFQGLPGIAGQHGDQGAPGSVGPAGPRGPAGPSGPPGKDGRPGHAGAVGPAGLRG
SQGSQGPAGPPGPPGLPGPPGPSGGGYDFGYEGDFYRADQPRTQASLRPKDYEVDATLKS
LNNQIETILSPEGSKKNPARTCRDLRLSHPEWSSGFYWIDPNQGCTMDAIKVFCDFSTGE
TCIRAQPENIPAKAWYNNRNPQVKKHVWFGETLNGGTQFEYNTEGVTSKDMATQLAFMRL
LANHASQNITYHCKNSVAYMDAESGSLKKAVILQGSNDVELTAEGNSRFTFTVLEDGCSR
KTNEWGKTVIEYKTNKPSRLPFLDIALLDIGDTDQELRLDIGPVCFK
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgcggacgcgcgcctctggctgctgctcgcggccacttggtgccttgcc
gcagctcaggctgtacaggagacacccaaaggaagaaagggaccacgaggagacagaggt
ccacgaggtcaaaggggtcccccaggccctccaggcagagatggtgaagatggtccccca
ggccctcccgggccccctggtcctcccggcctcggagggaacttcgcagcccagtatgat
cctagcaaaggactggacatgggcccaggaccaatgggtttgatgggacccagaggcccc
cctggtgcaagtggacctcctggtgcccaaggcttccaaggacccgctggtgagcccgga
gagcctggtcagactggtcctgcaggtgcccgcggaccacccggaccccctggaaagtct
ggtgaagatggtcaccctggaaagcctggaaggcctggtgagagaggcattgtcggacca
cagggtgctcgtggcttccccgggactccaggcctgcctggattcaagggaattcggggg
cacaatggtctggatggactgaagggacaagctggtgctcctggtgtcaagggtgaacct
ggtgcccccggtgagaatgggacccctggccaagcaggagcccgaggcctcccaggagag
agaggacgcattggaggtgctggccctgcgggagcccgtggaagtgacggtagcgtcggc
cctgttggacctgccggtcccattggctctgctggcccccctggcttcccaggtgcccct
ggccccaagggagaactcggacctgtcggcaaccctggccctgctggccctgctggtcct
cgtggggagctgggtcttccaggcatgactggccctgtcggtcccgcgggtaaccctggt
gccaatggtcttacaggagccaagggggctgcgggtcttcctggtgtcgctggtgcccct
ggtctgcctggtcctcgaggaatccctggccctgctggtgctgctggtgcttctggtccc
agaggccttgcgggtgaacctggtcctgctggttccaaaggagaaagtggaaacaagggg
gagccgggctctgccgggccccaaggccctcctggccccagtggtgaagaaggcaagaga
ggacctaatggcgaaccaggctccaccggccccacaggacccgcaggactcagaggtgtt
cctggatcccgaggtcttcctggagctgatggccgagctggtggcatgggtccccctggt
aaccgaggcgcctctggtcctgccggagccagaggccccaacggagatgctggtcggcct
ggcgagcctggtctcatgggccccagaggtctccctggctcccctggaaatgccggcccc
actggtaaagaaggccctgccggtcttcctggtgctgatggcagacctggccccacaggt
cctgctggaaacagaggggaacctggtaatattggcttcccaggacccaagggccctaat
ggtgatcctggcaaaagtggggacaaaggtcatgctggtcttgctggtgctcggggtgct
cctggccccgatgggaacaatggtgctcagggaccccctggtcctgctggtgtccaaggt
ggaaaaggtgaacagggtcccgctggtcctccaggctttcagggtctacctggcccctca
ggccctgctggtgaaggcggcaaagtaggagaaaggggtctccctggtgaatttggcctc
cccggccctgctggcccaagaggtgagcgtggtccccccggagaaagcggagcagtcggt
cctacaggttccatcggaagccgaggtgcatctggccccccaggccctgatggcaacaag
ggtgagcctggtgttgttggtgcccccggaagtgctggtcccgctggctctggtggagtg
ccaggagagcgaggtgccgccggtgtccctggaggcaaaggagagaagggtgaaactggc
ctcagaggtgactttggtaatccaggcagagacggtgctcggggacctcctggagccata
ggtgccccgggccctgctggagccacaggtgaaaggggtgaagctggtcctgctggtcct
gtcggtcctactggagcccgaggcgctcctggtgatcgtggagaggctggccctgctggc
cccaatggattcgctggtcctcctggcgctgctggtcaagctggagcaaagggggaacgt
ggtaccaagggacccaaaggagaaaatggtgctgttggccccactggccctgtgggtgca
gctggcccttcgggtcccaatggcccccctggtcctgttggaggtcgtggtgatggtggc
ccccctggtgcaactggtttccctggtgctgctgggagaactggagcccctggccctgct
ggtatcactggtcctcccggcccccctggtgcttctggaaaagaaggcccccgtggtcct
cgtggtgaccaaggtccccttggtcgggctggagagacaggcgctgttggcccccctggc
ttcgctggagagaagggtcctcccggagagtctggtgctagcggtccccccggctcttca
ggtcctcaagggctccttggtgctcctggcattcttggtctccctggctcgagaggagag
cgtggtcttcctggggtctctggagcactgggtgagcccggtcctctcggcattgctggt
cctccaggcgctcgaggtccccctggtggcgtgggtagccctggtgtcaatggcgctcct
ggagaagctggtcgtgatggcaaccctggcaatgatggtccccctggccgagacggtctt
gctggtcacaagggagagcgcggctaccctggcaaccctggcgctgttggtaacgctgga
gctcccggccctcatgggactgtgggtcctgctggcaagcctggaaaccgtggtgagccg
ggtcctgctggctcagtgggtcctgttggcccctttggtgcaagaggtcctagcggtccc
caaggtccccgaggtgacaagggagaagttggtgacaagggaccaagaggtttgaacggt
ttgaaaggacacaatggattccaaggtcttcctggtatcgctggccagcatggcgatcaa
ggtgctcccggttcagttggccctgccggccccaggggtcctgctggtccttctggccct
cctggtaaagatggtcgccctggacatgcaggtgctgttgggcctgctggtcttcgtggt
tctcaaggcagtcaaggccccgctggtcctcctggtccccctggcctgcctggtccccct
ggcccaagtggcggtggctatgactttggttatgaaggtgatttctaccgggctgaccag
cctcgcactcaggcttccctcagacctaaggactatgaagtggatgctactctgaaatcc
ctcaacaaccaaattgagaccatcctcagcccagaaggttccaagaagaaccctgctcgt
acctgccgagatctgagactcagccacccagaatggagcagtggtttctactggattgac
cccaaccagggctgcaccatggatgccatcaaagtgttctgtgacttctccaccggggag
acctgcatccgagcccagcccgagaacatccctgccaaggcctggtacaataacaggaac
ccccaggtcaagaagcacgtgtggtttggagagacactcaatggaggcacgcagtttgaa
tacaacacagaaggtgtgacctcaaaggatatggccacgcagctggccttcatgcgcctg
ctggccaaccacgcctctcagaacatcacctatcactgcaagaacagcgtggcctacatg
gacgctgagagcggctctctgaagaaggcagtcatcctgcagggctccaacgacgtggag
ctcacagccgaaggcaacagccgcttcacattcactgtgctggaggatggctgctccaga
aagaccaatgagtggggaaagactgtcatcgaatacaagaccaacaaaccctctcgcctg
cccttccttgacattgcacttctggacattggcgatacagaccaagaattacgtttggac
attggcccagtctgttttaaatga
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