Trichosurus vulpecula (common brushtail): 118851394
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Entry
118851394 CDS
T10126
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118851394 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118851394 (MTREX)
03041 Spliceosome [BR:
tvp03041
]
118851394 (MTREX)
03009 Ribosome biogenesis [BR:
tvp03009
]
118851394 (MTREX)
03016 Transfer RNA biogenesis [BR:
tvp03016
]
118851394 (MTREX)
Enzymes [BR:
tvp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118851394 (MTREX)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118851394 (MTREX)
Spliceosome [BR:
tvp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118851394 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
118851394 (MTREX)
Ribosome biogenesis [BR:
tvp03009
]
Eukaryotic type
Pre-60S particles
Helicases
118851394 (MTREX)
Transfer RNA biogenesis [BR:
tvp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118851394 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
118851394
NCBI-ProteinID:
XP_036616730
LinkDB
All DBs
Position
1:418844590..418940710
Genome browser
AA seq
1037 aa
AA seq
DB search
MADAFGDELFSVFEDESPAPGAKKGKEAAEAAGKAKKRTDDKPQSASTNVGKNKRDLELE
GTDEPIFGKKPRIENTLAEDVSLADLMPRVKVEAVETVEGCTHEVALPADEEYVPLKPRD
GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT
DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTAEEKKMVEEVFNNAID
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGI
NMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKKLE
AQYNAIAIPNEESVVIYYKIRQQLAKLAKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDF
GWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPGEKGEMQVV
PVLVHLLSAISSVRLYIPRDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQG
LKKVIQKVEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAIDIKSAKRELKKARTVLQMD
ELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALL
SCFVFQENSTELPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLNTFKSNLMDV
VYTWATGCTFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGLCL
TLNQWIFFLIKVLVYIC
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggagacgagctcttcagcgtgttcgaagacgaatcgccggccccc
ggggctaagaaagggaaagaggcggcagaggccgctggcaaggccaaaaaacggacagat
gataaaccacagtcagcatccaccaatgttgggaagaacaaaagagatttagaattggaa
ggtacagatgaacccatatttggaaagaagcccagaatagaaaatacattagcagaagat
gtaagcctggcagatctcatgcccagagtcaaggtagaagcagtggaaactgttgaaggc
tgtacacatgaggttgcattacctgcagatgaagaatacgttccactgaagccacgagat
ggaaaagctgccaaggaatatccattcattcttgatgcctttcagagagaagccattcag
tgtgtagataacaaccagtctgttttagtttctgcacatacatcagctggaaaaactgtc
tgtgctgagtacgccattgctttggctttgagagaaaagcagcgtgtgatatttaccagc
ccaattaaggctttaagtaatcagaaataccgtgaaatgtatgaagaatttcaagatgtt
ggcctgatgactggtgatgtcaccataaatcctacagcttcttgcctggttatgactact
gagattttgagaagtatgctataccgagggtctgaggttatgcgagaagttgcttgggtt
atatttgatgaaattcattatatgagagattcagagcgtggtgtggtatgggaagaaact
attattttgcttcctgataatgttcactatgtcttcctttctgctactattccaaatgct
cgacagtttgcagaatggatttgtcatttacataaacagccttgccatgtaatttacaca
gattatcgaccaactccattgcaacattatatctttccagcagggggagatggccttcat
cttgttgttgatgaaaatggtgatttcagagaagataattttaataccgcaatgcaagta
cttagagatgcaggagatttggcaaaaggagatcagaagggaaggaaaggaggaacaaaa
ggaccatcaaatgtgttcaaaattgtgaagatgataatggaaagaaattttcagcctgta
atcatttttagtttcagtaaaaaagactgcgaagcatatgccctccagatgaccaaatta
gatttcaacacagctgaagaaaagaagatggttgaagaagtatttaataatgcaattgac
tgcttatctgatgaagacaaaaagcttcctcaggttgagcatgtgcttcctcttttgaag
cgaggaattggtattcaccatggtggtttgcttcctattttgaaagagaccatagaaatt
ctgttttcagaaggattgataaaggccttatttgcaacagagacttttgctatgggaatt
aacatgccagccaggactgtgttgtttacaaatgcccgtaaatttgatgggaaagatttt
cgatggatttcttctggtgaatatattcaaatgtctggtcgagctggaagaagaggtatg
gatgagagaggaatagtcattcttatggtggatgaaaagatgagtccaactgtaggaaaa
cagctattaaagggctcagctgatcctctcaatagtgcttttcacttgacctacaacatg
gttctgaatttactgcgtgtagaagaaattaaccctgagtatatgttggaaaaatctttt
tatcaatttcagcattatagagctattccaggagtagtagagaaggtaaagaaactagaa
gcacagtataatgcaatagcaattcccaatgaagaaagtgtagttatctactacaaaata
agacaacagcttgccaaactggctaaagagattgaagaatacatccacaaaccgaagtac
tgtttgccatttttgcagccaggacgattggtaaaggtgaagaatgaaggggatgatttt
ggttggggagtagtggtgaatttctccaagaaatcaaatgttaagcccaattctggtgaa
ttagatcctttatatgttgtagaagtgcttttacattgtagcaaagagagcttgaaaaat
tctgctaccgaggctgctaagccagcaaaacctggtgagaaaggagagatgcaggttgtt
ccagtcctggtgcacctgctgtccgctatcagcagtgttcggctttatattcccagagat
ctgaggccagttgacaaccgacagagcgtgttaaaatcaatacaggaagttcagaaacgt
tttcctgatggtgttccattactagatcccatcgatgatatgggcatacaagatcaagga
cttaaaaaagtcatccagaaagtagaggcttttgaacatcgaatgtattctcatccactt
cataatgattcaaatttggaaactgtttataaactttgtgaaagaaaagcacagattgct
atagatattaaatctgcaaagcgagaactaaagaaagcaagaactgtcttacaaatggat
gagcttaagtgtcggaaacgtgttttgcgaaggctgggttttgctacatcttctgatgtc
attgagatgaaaggacgagtggcatgtgagatcagcagtgctgatgagctgcttttaact
gaaatgatgtttaacggacttttcaatgacttgtctgcagagcaagctactgcgttgcta
agctgttttgtgtttcaggagaattccactgaattgcccaaattgacagaacagttagca
ggaccacttcgccagatgcaggaatgtgctaaaaggattgcaaaggtttctgcagaggcc
aaattagaaattgatgaagagacgtacctaaacacgttcaagtcaaacttaatggatgta
gtctatacctgggcaactggatgtacatttgcccacatctgcaaaatgactgatgtgttt
gaaggcagcataattcgttgtatgaggcgtctggaagaattgcttcggcagatgtgtcaa
gctgcaaaagctattggaaacactgaactggagaataaatttgcagaaggtttgtgcctc
acccttaaccaatggatttttttcctaataaaagtgttggtttatatatgttga
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integrated database retrieval system
