Trichosurus vulpecula (common brushtail): 118852992
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Entry
118852992 CDS
T10126
Symbol
SMARCAD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
118852992 (SMARCAD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tvp03036
]
118852992 (SMARCAD1)
Chromosome and associated proteins [BR:
tvp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
118852992 (SMARCAD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
ERCC3_RAD25_C
CUE
LA-virus_coat
Motif
Other DBs
NCBI-GeneID:
118852992
NCBI-ProteinID:
XP_036618670
LinkDB
All DBs
Position
6:58200968..58292061
Genome browser
AA seq
1057 aa
AA seq
DB search
MSLFNLDRFRFEKRNKIQEQPEPAPQPPPPPPPLPPPPPPHVELPSPVSTIIDDDDLDGG
KGSRPGTPDSDITEKTEDSSVPETPEPERKSGVSYFKNQKGIQFIDLSSDSEDFGSPNCS
NRNQDEISGREPVIIVSEQSEDEQTEEYPDMTRRNDDISELEDLKDAKLQTLKELFPQGS
DSDLIKLIESTSTMDGAIAAALLMFGEGIPRKRKLDSSSSYTSEDDEDDDDDQTVKRKRF
NPLEESKDFEESEDKWEKQEAIVAKLQTEFPSLAKEELREVLKEHEWMYNEALESLRVFA
EDQQGKKSLPYTMMKHTDFTTTNKVAMDVQYPSKSEVSNGKAVSRKSQNHLKNTPKTKMK
QKCAVKAQNGFNKKGKKTFFHPKKEMQDSEYDSGSDAGSSLDEDYSSGEEVMEDGYKGKI
LHFLQGASIGELTLIPQCSQKKAQKITELRPFNSWEALFTKMCKTNGLSEDLIWHCKTLI
QERDVVIRLMNKCEDISNKLTKQVTRLTEGGGGWNIDQPSILNQSLSLKPYQKIGLNWLA
LLHKHGLNGILADEMGLGKTIQAISFLAYLYQEGNRGPHLIVVPASTLDNWIREVNLWCS
NLDVLFYYGSQEDRKQLRYDIHNKVVDFNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDE
GHMLKNMGSVRYQHLMTINAKNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRM
FSSKAKSAEEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDCVELCAMSEKQEQ
LYFNLFNKMKKSINGMEKSSEMGNVMMQLRKMANHPLLHRQYYTAEKLKIMSQLMLKEPT
HCEANPDLIFEDMEVMTDFELHLLCKQYAHINDFMLDMDLILDSGKFKKLECILSELKEK
GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDQFNTDMDIFIFLLST
KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVQVIKLISQGTIEESMLK
INQQKLKLEQDMTTVDEGDEGNVPADIATLLKTSLGL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcttcaacctggaccggttccgctttgagaagaggaataaaattcaggaacag
cctgagccggccccccagccgccgcctcctcctcctcctcttcctcctcctcctcctcct
cacgtcgagcttccttcacccgtttccactatcattgacgatgacgatctcgacgggggc
aaagggagcaggccaggaacgccagattcagatataacagaaaaaacagaagactccagt
gtaccagaaactccagagcctgaaagaaagtcaggtgtatcatatttcaagaatcaaaaa
ggaatacagtttattgatttatcttctgacagtgaagattttggctccccaaattgttcc
aatagaaatcaagacgaaatttctggaagagaaccagtgattatagtttctgagcaatct
gaagatgaacagactgaagagtatcctgatatgacacgaagaaatgatgatatctcagaa
ttggaagaccttaaagatgcaaagcttcagactttgaaggaactatttccacaaggaagt
gacagtgatttaattaagttgattgaatcaacaagtacaatggatggagcaatagctgct
gcattgctgatgtttggtgaaggtatacctcggaaaagaaaattagattcatcttcctca
tacacctctgaagatgatgaggatgatgatgatgatcaaactgtaaaaaggaaacggttc
aatcctcttgaagagtctaaggattttgaagaatcagaagataaatgggagaagcaggaa
gcaatagtagcaaagctgcagactgagtttcccagtttggctaaagaggaactaagagaa
gtacttaaggaacatgaatggatgtataatgaagctttggaatctttaagagtatttgct
gaagatcaacaaggtaaaaaatctctgccgtataccatgatgaagcatacagatttcaca
actacaaataaggttgcaatggatgttcagtatccttcaaaaagtgaagtttcaaatgga
aaagccgtctcaagaaagagtcagaatcaccttaaaaatactcctaaaacaaagatgaaa
caaaaatgtgctgttaaagcacagaatggttttaacaagaaaggcaaaaaaacttttttc
catcctaaaaaggaaatgcaggactctgaatatgattccggctctgatgccgggagctct
ttggatgaggactatagcagtggtgaggaggtgatggaggacggctacaaaggtaaaata
cttcacttcctgcaaggggcttccattggtgagctcactttgattccccagtgttctcag
aagaaggctcaaaagataacagagctccggccctttaacagttgggaagctctgttcaca
aaaatgtgcaagacaaatgggctgtcagaagatttgatatggcactgtaaaacattgatc
caagaaagggacgtagttataagacttatgaacaaatgtgaagacatttcaaataaattg
acaaagcaggtgaccaggcttactgaaggtggaggtggatggaacatagatcaaccttcc
attttaaaccaaagtttgtctctcaagccatatcagaaaattggtttgaattggctagca
ctactacataaacacggactaaatggtattttggctgatgaaatgggattagggaaaaca
attcaagccatttccttcctggcatacctctaccaagaaggtaatagaggtcctcattta
attgttgtgccagcttcaactttagacaactggataagagaagttaatttatggtgctct
aacctagatgtcctcttttattatggttctcaagaagatcgcaaacagcttagatatgat
attcataataaagttgtagacttcaatgtgattgtgactacgtacaattgtgcaattagc
agttcagatgaccgcagtctatttcgacggctgaaacttaactatgcaatcttcgatgag
ggccacatgttgaagaatatgggctctgtgcgctaccagcacctcatgaccattaacgca
aagaatcgtctgctacttacaggcactcctgttcagaataatctattggaactcatgtct
ctgttgaattttgtcatgccccatatgttcagtagtagcaccagtgaaatcagaaggatg
ttctcttccaaagcaaagtcagctgaagaacaaagtatatatgaaaaggagagaatagca
catgctaagcaaattataaagccatttattctgagaagagtaaaagaagaggtccttaag
cagctacctcccaaaaaagattgtgttgagctgtgtgcaatgtcagaaaagcaggaacaa
ctgtactttaacctttttaacaaaatgaagaaatccatcaatggcatggagaaaagctca
gaaatgggcaatgtgatgatgcaactaagaaaaatggccaatcatcctttattacatcgt
caatattacacagctgaaaagctcaaaataatgtcacagctgatgttaaaggaacctaca
cattgcgaagctaatcctgacctgatttttgaagatatggaagtcatgacagactttgaa
ctacatttactttgtaaacagtatgcacatatcaatgactttatgttagacatggatctc
attttggactccggaaaattcaagaaactagaatgcattttgtctgaattaaaagaaaag
ggtgacagggttgtattatttagccaatttacaatgatgctggacatcttagaggttctt
ctaaaacaccatcagcatagatatcttagattggatgggaagactcaaatttctgaaagg
attcacctaattgaccagttcaatacagacatggacatcttcatatttctgctatcaaca
aaagctggtggacttgggataaatctgacttctgcaaatgttgtcatacttcacgatatt
gactgtaatccatacaatgacaaacaagctgaagatcgatgccatagagtaggtcagact
aaagaagtacaagtcataaaattaataagtcaagggacaatagaagagtccatgctaaaa
atcaaccaacagaaattgaaactagaacaagatatgaccacggtagatgaaggtgatgaa
ggaaatgtacctgcagatatagctacattactaaagacttcattaggtctctaa
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