Trichosurus vulpecula (common brushtail): 118856146
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Entry
118856146 CDS
T10126
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03013
Nucleocytoplasmic transport
tvp03015
mRNA surveillance pathway
tvp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118856146 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
118856146 (DDX39B)
03015 mRNA surveillance pathway
118856146 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118856146 (DDX39B)
03041 Spliceosome [BR:
tvp03041
]
118856146 (DDX39B)
Enzymes [BR:
tvp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118856146 (DDX39B)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118856146 (DDX39B)
Spliceosome [BR:
tvp03041
]
Complex C
Other components
EJC/TREX
118856146 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118856146 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118856146
NCBI-ProteinID:
XP_036622156
LinkDB
All DBs
Position
7:complement(267141925..267150888)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDDVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQICKEYERFSKYMPNVKVAVFFGGLSIKKDEELLKKNCPHVVVGTPGRILALA
RNKILNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgacgtggacaacgagctcctggattacgaagacgacgacgtggagacg
gccgcggggggggacggagccgaggcccctgccaagaaagatgtgaagggttcctacgtc
tccatccacagctctgggttccgtgactttctcctcaagccagagctgctccgggccatc
gtagactgtggctttgagcatccgtccgaagtccagcatgagtgtattcctcaggccatc
ttgggaatggatgtcttgtgccaggccaagtcaggcatgggaaagacagctgtgtttgtg
ctggccacgctgcagcaactggagccagtcactggtcaggtttctgtgctggtgatgtgt
cacactcgggagctggcctttcagatctgcaaggagtacgagcgcttctccaaatacatg
cctaatgtcaaggtggcggtgttttttggtggtctatcaataaaaaaggatgaggagttg
ctgaagaagaactgcccacatgttgtcgtggggaccccgggccgtatcttagccctggcc
cgaaataagatcctcaatctcaaacacattaaacattttatcttggatgagtgtgacaaa
atgctcgaacagctcgacatgcgtcgggatgtccaggaaattttccgcatgaccccccat
gagaagcaggtcatgatgttcagtgccaccctgagcaaagagatccgccctgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggctgcagcagtactacgtgaagctgaaggacaatgagaagaaccgaaagctcttcgac
ctcctggatgttctggagttcaaccaggtggtgatcttcgtgaaatctgtgcagcgctgc
attgccctggcccagctcctagtggaacagaacttcccggccattgctatccatcgtggg
atgccccaagaggagaggttgtcccggtatcagcagttcaaggatttccagcgtcgtatt
cttgtggccactaacctgtttggccggggcatggatatcgaacgagtaaacatcgccttc
aactatgatatgccagaggactcagacacctacttacacagggtggctagggcaggccgg
tttggtacaaagggtttggccatcacatttgtatcagatgaaaatgacgccaaaatcctc
aatgacgtccaggatcgcttcgaggtcaacatcagtgaactgcccgatgagatagacatc
tcttcctacattgagcagactcggtag
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integrated database retrieval system
