Trichosurus vulpecula (common brushtail): 118856531
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Entry
118856531 CDS
T10126
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03020
RNA polymerase
tvp03420
Nucleotide excision repair
tvp05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118856531 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
118856531 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
118856531 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvp03021
]
118856531 (POLR2A)
03400 DNA repair and recombination proteins [BR:
tvp03400
]
118856531 (POLR2A)
Enzymes [BR:
tvp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118856531 (POLR2A)
Transcription machinery [BR:
tvp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118856531 (POLR2A)
DNA repair and recombination proteins [BR:
tvp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118856531 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
118856531
NCBI-ProteinID:
XP_036622752
LinkDB
All DBs
Position
7:complement(260952334..260988978)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKL
VIVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggtgggggacctccctctggggatagcgcatgcccactacgaactatcaagcgc
gtgcaattcggagtcctcagtccagatgaactgaaacggatgtccgtgaccgaaggtggc
atcaagtaccctgagacaacggagggggggcgccccaagcttgggggactgatggatccc
aggcaaggcgtgattgagcggacaggacgctgtcagacgtgtgcagggaacatgacagaa
tgtcctggccactttgggcacattgagctggctaagcctgtgttccatgtgggtttcttg
gtgaagacaatgaaagttctgcgctgtgtctgcttcttctgttccaagttgcttgtggac
tcaaacaatcccaaaatcaaagatatactgggtaagtcaaaaggacaaccaaagaaacga
ctcacccatgtctatgacctctgcaaaggcaagaatatctgtgagggaggtgaggaaatg
gacaacaagtttggagtggagcagcctgaaggcgatgaggatcttaccaaagaaaagggc
catggtggatgtgggaggtaccaacctcggattcggcgcacaggattggagctgtatgca
gagtggaagcacgtcaatgaggactcacaggaaaagaaaatcttgctaagtcctgagcgt
gtacatgagattttcaagcgtatttcagatgaggagtgtttcgtgttgggcatggagcca
cgctatgctcggcccgagtggatgattgtcaccgtgctccctgttccccctctctctgtg
cggcctgctgtcgttatgcagggctctgcccgtaaccaggatgacctgacacacaagttg
gctgacattgtgaagatcaacaaccagctgcggcggaatgagcaaaatggagccgctgct
cacgtgattgcagaggatgtgaagttgctgcagttccatgtggccaccatggtggacaat
gagctgcctggcctgcccagggcaatgcagaagtcaggtaggcccctcaagtccctgaag
cagcggttgaagggcaaagaagggcgagtccgtggtaatctgatgggcaagcgggtggac
ttttcagcccgcacagtcatcacacctgatcctaacctttccatcgaccaagtgggcgtg
cctcgttctattgctgccaacatgacctttgcagaaatcgtcacccccttcaacattgac
aggcttcaagagctggtacggagggggaacagccagtaccctggagccaagtacatcatc
cgggataatggtgaccgaattgatctacgcttccaccccaagcctagcgacctccacctg
caaactggctacaaggtagagcgtcatatgtgtgatggggacattgtcatcttcaaccgg
cagccaacactacacaagatgtccatgatgggtcacagggtccgcatcttgccttggtcc
acgttccgcctgaatctcagtgtgacaacaccctacaatgcagactttgatggggatgag
atgaacctgcacttaccacagtctctagagactagagccgagatccaggaactggccatg
gtgccccgaatgattgttacacctcagagtaaccgacctgtcatgggtattgtgcaagat
acacttacagcggtgcgaaagttcaccaagagagacgtcttcctagagaggggtgaagtg
atgaatttattgatgttcctttcaacatgggatgggaaggtaccccaaccagccatattg
aaaccccgacctttgtggacgggaaaacagatcttctctcttattgtgcctgggcacatc
aactgtatccgaacccacagcactcaccctgatgatgaagacagtggtccttacaagcac
atctctcctggggacaccaaggtggtagtggagaatggggagctgatcatggggattctg
tgcaagaagtctctgggcacatcagctggatcacttgtccatatctcatacctagagatg
ggccatgacactacccgtctcttttactccaacattcagacagtcattaataactggctt
ctcatagaaggtcataccattggcattggggactccatcgctgatgccaagacctaccag
gatattcagaacaccatcaagaaagccaagcaagatgtaatagaggtgatcgagaaggca
cataacaacgaactggaaccgacaccaggaaacactcttcggcagacatttgaaaatcag
gttaaccgaatccttaatgatgcaagagacaagaccggctcctctgcccagaagtccctg
tctgaatacaataattttaagtccatggttgtatcaggagcaaagggttctaaaatcaat
atttcccaggttattgcagtagtgggacagcagaatgtagaaggcaagcggattcccttt
ggctttaaacaccggacccttccccacttcatcaaagatgattatggtcctgagagccga
ggcttcgtggagaactcctacttggctggtctcacacccacagagttcttcttccatgcc
atgggtgggcgtgaagggctcattgacactgctgtcaaaacagctgaaactggctacatc
cagagacgtctgatcaaatcaatggagtctgtgatggtgaaatatgatgcaacagtgcgc
aactccatcaaccaggtggtacagctacgttatggtgaagatggactggctggtgaaagc
gttgagttccagaacctggcaaccctcaagccttccaataaggcctttgagaaaaagttc
cgttttgactacactaatgagcgagcgctgcggcgtaccctgcaggaggagttagtgaag
gatgtgctgagtaatgcccacatccagaatgagctggagcgtgagtttgagcgaatgcgt
gaggacagggaggtgcttagagtcatcttccctactggagacagcaaggtggttcttccc
tgtaacttactccgtatgatttggaatgcccagaaaatcttccacatcaacccccgcctc
ccctcggacctgcatcccatcaaggttgtcgatggtgttaaggaattgagtaagaaattg
gtgattgtcaatggagaagaccctctgagccgtcaggcacaggaaaatgccacgttgctc
ttcaacattcacttgcgctccactctgtgctcaagacgcatggcagaggagttcagacta
agcggggaagccttcgactggttactaggggagattgagtccaaattcaaccaggctatt
gcccatcctggggagatggtaggagctctggcagcccagtccctgggggaaccagccacc
cagatgaccttgaacacttttcactatgctggtgtgtctgccaagaatgtgacgctgggt
gtgccccgactcaaggaacttatcaacatttctaagaagcccaagacaccctcacttact
gtgttcttgttgggtcagtctgcccgtgatgctgagagagccaaggatattttgtgccgg
ctggaacacacaactctgaggaaggtgacagctaacactgccatctactacgaccctaat
ccccagagcacagtagtagcagaggaccaagagtgggtcaatgtctattatgagatgccc
gactttgatgttgctcggatttcaccctggttgctgcgagtagagctggaccgtaagcac
atgacggatcgaaagctgactatggagcagattgctgagaaaataaatgcaggttttggt
gatgacttaaactgcatcttcaatgatgacaacgcagagaagctggtcctcagaattcga
atcatgaacagcgatgagaacaagatgcaagaggaagaggaagtggtggataagatggac
gatgatgtctttctgcgctgcatcgagtccaacatgctgacagatatgacgttgcagggc
atcgagcagatcagcaaggtctacatgcacctgcctcagacagacaataagaagaaaatc
atcatcacggaagatggagagttcaaggcgctgcaggagtggattctagaaacggacgga
gtgagcctgatgcgcgtactgagtgagaaggatgtggaccccgtgcgcacaacctccaac
gacatcgtggagatcttcacggtgttgggcattgaggctgtgaggaaggctttagagcgg
gaactgtatcatgtgatctcctttgatgggtcctatgtcaactaccgccatttggcccta
ctttgtgacaccatgacctgccgtgggcacttgatggccattactaggcatggcgtcaac
cgacaagacactggacccctcatgaagtgttcctttgaagagacggtggatgtgctgatg
gaggctgcagcccatggagaaagtgaccccatgaaaggtgtatctgagaacatcatgctc
ggccagctggcccccgctggcacgggctgctttgacctcttactggatgctgagaaatgc
aagtatggcatggagatccccactaacattcctggcctgggagccgctggacctactggc
atgttctttggttcagctcccagccccatggggggcatgtctcctgccatgactccctgg
aaccagggggccacccctgcttatggagcctggtcccctagtgttgggagtgggatgact
cctggagctgctggcttctcccctagtgctgcatcagatgctagtggctttagtcctggc
tattcaccagcctggtcccctacacctggctccccaggatctccaggcccttcaagccct
tacatcccttcaccaggtggagccatgtctcccagctattcaccaacatctccagcctat
gagccccggtccccagggggttatacccctcagagtccttcttactctcccacctctccc
tcctactcacccacatctcccagctactccccaaccagccccaactatagccccacgtct
cctagctactctcccacctctcccagctactcccccacctctcccagctactcccccacc
tctcccagctactcccccacctctcccagctactcccccacctctcccagctactcccct
acctctcccagctactctcccacctctcccagctactctcccacctctcccagctactcc
cccacctctcccagctactcccccacctctcccagttactcccccacctctcccagctac
tcccccacttctcccagctattcccccacatctcccagctactcgcccacatctcccagc
tattctcctacttcccctaactactcacctaccagccccaactataccccaacatcaccc
agctatagtccaacttcgcctagctactcacccaccagccccaactatacacctacaagt
cccaactacagtcctacctcccccagctactctccaacctcccccagctactccccaacc
tcccctagctattctccctcgagcccacgctatacaccacagtccccaacctatactccg
agctctcctagttacagccccagctcgcctagctatagccccacttcacctaaatatacc
ccaaccagtccttcctatagccccagctcaccagagtatacaccgacctcccccaagtat
tcgcctaccagccccaagtattcgcctaccagccctaagtactcgcccactagccctact
tactcacctaccaccccaaaatattcacctacatctcctacctactcgccaacttcaccg
gtttatactccaacctcccccaagtactctccaacctcccccacttactcacctacctcc
cccaagtattcaccaaccagcccaacttattcacccacctctcctaagggttctacctac
tctcccacctcacctggctactctccaaccagtcccacctacagcctcaccagcccagcc
atcagcccagatgacagtgacgaggaaaactga
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integrated database retrieval system
