Trichosurus vulpecula (common brushtail): 118856583
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Entry
118856583 CDS
T10126
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
118856583 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tvp04147
]
118856583 (COL18A1)
00535 Proteoglycans [BR:
tvp00535
]
118856583 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
tvp00536
]
118856583 (COL18A1)
Exosome [BR:
tvp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118856583 (COL18A1)
Proteoglycans [BR:
tvp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118856583 (COL18A1)
Glycosaminoglycan binding proteins [BR:
tvp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118856583 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
118856583
NCBI-ProteinID:
XP_036622856
LinkDB
All DBs
Position
7:complement(10949006..11086391)
Genome browser
AA seq
1558 aa
AA seq
DB search
MPTNRSSGAWLLSPLVVGALGDRLSGSASNRQASSRGGAHHGHHHDNSRHLGPLAANLSG
YSNGSVSDALNLVGPASTNASGSWGSDSLTASGHLSHPGLYDEVPSSLSRLALAPGRCVP
LPANLPFCSQPGTECLWLPNYAHHDSAQQVWAALREWEALLRTRCHRFLEAFFCLLLVPR
CNASNPSIWPPPPPCREFCEGLRDLCWSQLHEGRLPVPCSSLPAQGDAQQACVFIDVTAE
NFSAEVSLPQLLGQPPPKHVSQIYDPDIGLAYVFGPNANSGQVARYHVPNPFYRDFSLLF
HIKPTSERAGVLLALTDAAQAIISMGVKISEPHGGKQDVLFFYTEPGVGETHTAASFSLP
SFVNQWTRFAISVDGDEVALYVNCKEIQRLPLDRSLQELELEPGAGLFVAQAGGADPDKF
QGVISELKLRGDPRVTLLQCLDDDDDDSDGASGDFGSGADEQGEPSGSDVEPPLSPSLPV
PPPVTLPPLDTTTTSSQPGLVKEEDAHISSSGAQLYSHGGEEARDPTRLEGTQDQDRRLT
EESARFGSPGLKGQKGEPGVQGPPGPVGPQGPAGPAIQSPDSSTVHQVPGPQGPPGPTGP
PGKNGEPGDPGEDGKPGEMGPQGFPGTPGDVGPKGDKGDPGTGPRGPPGPPGPPGPPGPA
FRPDKLTFIDMEGSGFGGDLESIRGPRGFPGPPGPPGVPGLPGEPGRFGMNSTDGPAPPG
LPGVPGRDGSPGVRGPPGPAGLPGKDGRQGEQGQKGDRGDVGSPGLKGSKGDAGPVGAPG
ETGLAGLPGPMGPRGLPGPPGPPGPPGPGWAAGFDDMEGSGVPFWTATPSTRGAEGPQGP
PGSPGLKGDRGLVGQPGEKGDPGFPGLPGSEGVPGPQGPKGDPGSQGQKGEPGKDGVGQP
GPPGPPGPPGEVTYISEEGKTFASVSGREGRPGYAGFPGPAGPKGDIGANGPQGSPGAKG
EKGEPGSVLTLTEKGAKGDQGYRGPPGPYGRPGHKGEIGIPGRPGRPGMNGLKGEKGEPA
EANGGIGPRGPPGLPGPPGPPGPPGLLGTSFYDNNGFLESGRPGPPGLPGYQGSPGPKGD
KGEAGPAGPPGILPYDFTTLVEHMKGEKGEEGMKGVKGEPGSGGFFSSGIRGLPGPPGPP
GNPGVPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG
PPGPPGPPGPPGTSGTSSGQLRIWTTYQTMLNRAHEVPEGWLVYVSEREELYVRVRHGFK
KVLLEAQTVLSRGVDNEVAVLQPPVVEYSPGNSAPSGSHIQDGSLPYPRRGYPHSTAKPW
RADDIQANYPRFSEHANHHPPYHGVQQHHHDRIPSYHGSYTNVRPMQPTASPLHRHHDFQ
PALHLIALNGPQTGSMRGIRGADFQCFQQAREVGLMGTFRAFLSSRLQDLYSIVRRADRS
NVPIFNLQDEILFDSWEALFSGSEGQLKPGSRILSFDGKDVLRHSDWPQKSVWHGSDTKG
RRLTESYCETWRTDQGAATGQASSLFSGKLLEQKAASCQNSFIVLCIENSFMTSASRK
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atgcccactaaccgcagctctggagcctggcttctttctcctctggtggtgggtgctttg
ggtgacaggctttctggctcagcatctaatcggcaggcctcaagcagaggtggtgcccat
catggccaccaccatgacaacagcaggcatctgggcccgctggcagccaatctctctggg
tacagcaatggttctgtttctgatgcacttaatctggtgggccctgctagcaccaatgcc
tctgggtcttgggggtctgattcgctaactgcttctgggcatctctctcaccctggcctc
tacgatgaggtgccctcctccctgtcaagactggctttggccccggggcgctgcgtgccc
ctgccagccaatctgcccttctgcagccaaccgggcactgagtgcctctggctgcccaac
tatgcccaccatgacagtgcccagcaggtgtgggcagccctgcgagagtgggaggcgctg
ctgcgcactcggtgccaccgcttcctcgaagccttcttctgcttgctgcttgtgccccgg
tgtaatgcctccaacccctcgatatggccgccgccaccaccttgccgcgagttctgtgag
ggcctccgagacctgtgctggagccagctgcacgagggccggctgcccgtgccctgctcc
tcactcccagcccagggggatgcccagcaggcctgtgtgtttatagatgtgactgcagaa
aacttcagcgcagaagtgagcctccctcagctcctggggcagcctccccccaagcacgtt
tcccagatctatgaccctgacatcggcctcgcttacgtctttgggcccaatgccaacagc
ggccaggtagcacggtaccatgtgcccaaccccttctaccgagacttttctctgctcttt
cacatcaagcccaccagtgagcgggccggggtgctgctggccctcactgacgcggcccag
gccattatctccatgggcgtgaagatctcggagccccacggtggcaaacaggacgtgctc
ttcttctacactgagcctggtgtgggggagacgcacacagcagccagcttcagcctgccg
tccttcgtgaaccagtggacgcgctttgccatcagtgtggacggagatgaggtcgccctc
tatgtgaactgtaaggagatccagaggctccctctggatcggtctctgcaggagctggag
ctggaacccggcgctggcctctttgtggcccaggcgggaggagctgaccccgacaagttc
cagggggtgatctccgagttaaagctgagaggggacccccgagtgactctgctgcagtgt
ctggatgacgacgatgacgacagtgatggggcatctggagactttgggagtggagctgat
gagcagggagaaccctcagggtcagatgtggagcctcccttatcacccagcctcccagtg
cctcctccagtcacgttgccacccctggacacgaccaccacgagttcacagccaggcctt
gtcaaggaagaagatgcccacatatcttcctcgggagctcagctctattcccatggaggg
gaggaggccagagaccccacaaggcttgaggggactcaggaccaggacagaagactaacg
gaggaaagcgccagattcgggtctccaggcttgaagggacagaaaggtgaacctggggtc
cagggcccacctggacctgttggtccccaggggcctgctggccctgctatccagagtcca
gacagttccacagtgcaccaggtccctggaccacaaggacccccagggcctaccggaccc
cctgggaaaaatggagagccaggtgatcctggtgaggatggaaaacctggtgagatgggg
cctcagggcttcccaggaactccaggagacgtggggcccaagggtgacaagggagatcct
ggcactgggccgaggggccctcctggcccaccggggcccccaggacctcctgggcctgct
ttcagacctgacaagttgacttttatcgacatggaagggtctggctttggaggggacctg
gagagtatacggggtcctcgaggcttcccagggccgccgggacccccgggcgtgccaggt
ttaccgggtgagccgggtaggtttggaatgaacagcaccgatggccccgcccccccaggc
cttcctggggtgccaggcagagatggatcccctggagtccgaggacccccaggcccagcg
ggccttccaggaaaggatggacggcaaggggaacaagggcagaaaggagatcggggtgac
gtgggatccccaggactaaagggcagcaagggtgatgccggcccagttggagctccgggt
gaaacaggcttggctggtctccctggaccgatgggccctcgggggctgccgggccccccc
ggtcctccaggaccacctggcccaggctgggcagctggatttgatgacatggaaggttcc
ggggtgccattctggactgccacccccagcacccgaggggccgaaggaccacagggacca
cctggatctcctgggctcaagggtgatcgtggcttggttggacaacctggagaaaagggt
gatcctggctttcctgggctgcccgggagtgaaggcgtgccagggcctcagggtccaaaa
ggggatccgggaagccaggggcagaagggagaaccagggaaggatggtgtggggcagcct
ggccctcctgggcctcctggccctccaggagaggtgacctacatatctgaagaagggaaa
acatttgcaagcgtatcagggcgtgagggcagacccggctatgctggattcccgggccca
gctggtccaaaaggagatattggtgctaatgggccccagggttccccaggagccaaggga
gagaagggcgaacctggcagcgtcctcacactcactgagaaaggagccaagggggaccaa
ggctacagggggcccccgggcccctatggacgccctgggcacaaaggtgaaattggaatt
cctggaagaccaggccgcccaggcatgaatggactgaagggggagaaaggggagcctgca
gaggccaatggaggcataggaccaaggggccctcctggactcccagggcccccagggccc
cctggccccccaggcctccttggaacttctttctatgacaataacggattcctagagtct
ggccgccctgggcctccaggattgccgggttaccaaggttcccctggacccaagggtgac
aagggagaagccggacctgccggaccaccagggatcctgccgtatgatttcaccactctg
gtggagcacatgaagggggaaaaaggggaagaaggcatgaagggggtaaagggtgagccc
ggcagtggaggatttttcagctctggaatccgaggcttgcccggccctccaggcccccca
gggaaccccggtgttccgggtcctaagggagagagcatcaggggtcagcctggcccccca
ggacctcaggggcctccaggcataggctatgagggacggcagggtccccctgggcccccc
ggacccccaggaccaccgtcattcccaggaccccacaggcagactattagtgtccctggc
cccccaggacctccaggaccccctggccccccagggacttcaggaacatcatcagggcag
ctgagaatctggacgacctaccagaccatgctcaacagagcccatgaagtacctgaaggc
tggctggtctatgtctcggagagggaagagctgtatgtgcgagtacgtcacggcttcaag
aaagtcctgctggaggcccagactgtgctctctcggggggtggataacgaggttgcagtc
ctgcagccccctgttgtcgagtattcaccagggaactctgccccgtcaggctcccacatc
caagatggcagccttccctatcctcgccggggctatccacattcaaccgccaagccctgg
cgggcagacgacatccaggccaactacccacgattctccgagcacgccaatcatcacccg
ccgtatcatggtgtccagcagcaccatcacgaccgcatccccagctaccacggctcctac
accaacgtccggcccatgcagcccacggcctctccactgcacaggcaccatgacttccag
cctgctcttcatctcattgctctcaacggtccccagacgggtagcatgcgtggcatccgg
ggggccgacttccagtgcttccagcaggcccgggaggtgggtttgatgggcaccttccgg
gccttcctgtcctcccggctccaagacctctacagcatcgtccggagggcggaccgcagc
aacgtgcccatcttcaatctccaggacgagattctttttgacagctgggaggccctgttc
tcaggctcagaaggccagctcaagcctggctctcgcatcctctccttcgacggcaaggat
gttctccgacactctgactggccacagaagagtgtgtggcatggctctgacaccaaggga
cgccggctgacagagagctactgtgagacctggcggacagaccaaggggctgccactggc
caggcgtcctccctgttctcgggcaaactgctggagcagaaggccgcaagctgccagaac
agcttcattgtcctctgcatcgagaacagcttcatgacctctgcctccaggaagtag
DBGET
integrated database retrieval system
