Thioalkalivibrio versutus: TVD_00090
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Entry
TVD_00090 CDS
T03959
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVD_00090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvr03019
]
TVD_00090
Enzymes [BR:
tvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TVD_00090
Messenger RNA biogenesis [BR:
tvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TVD_00090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKJ93857
UniProt:
A0A0G3G2X0
LinkDB
All DBs
Position
complement(12602..13897)
Genome browser
AA seq
431 aa
AA seq
DB search
MTETVQDTPRFDQLDLPEPVQAGIRATGFETCTPIQAQTLPIALAGHDVAGQAQTGTGKT
AAFLIATFNRLLRQQPSPNRRPTDVRALILAPTRELAIQIHKDAESLGAETGLKLALAYG
GTGYDSQREQLEAGADILIGTPGRIIDYFKQKVFGLKHTEVVVLDEADRMFDLGFIKDVR
FLMRGCAPASERLSMLFSATLSFRVMELAYEHMNNPEKVQVEAETLTADRVRQVIYYPAN
DEKIPLLLGLARDLKPERAIVFVNTKHGAEKVCDWLNVNDQKAALLSGDVPQNKRSQLLE
HFAAGEYTYLVATDVAARGLHIPAVTHVFNFDLPQSGEDYVHRIGRTARAGAEGDAISFG
CEDSAFYLPDIESYLGERIPTASVDPARLFQDAVKPKPRPRKPRDDRRGGPRSGGGGRPG
GSRPQRSGNRG
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaccgtgcaggacacaccccgcttcgaccagctcgatctgcccgaacccgtc
caggcgggcatccgcgccaccggtttcgaaacctgcaccccgatccaggcacagaccctg
ccgatcgcgctggccggccacgacgtcgccggccaggcccagaccgggaccggcaagacg
gccgccttcctgatcgcgaccttcaaccgcctgctgcgccagcagccttcgcccaaccgg
cggcccacggacgtgcgcgccctgatcctggccccgacccgcgaactggcgatccagatc
cacaaggatgccgaatcgctgggcgccgagaccgggctgaagctcgcgctggcctacggc
ggcaccggctacgacagccagcgcgaacagctggaggccggcgccgacatcctgatcggc
acgcccggacgcatcatcgactacttcaagcagaaggtcttcggcctcaagcatacggag
gtggtggtgctggacgaggcggatcgcatgttcgatctcggcttcatcaaggatgtgcgc
tttctgatgcgtggctgcgcgccggccagcgaacgcctgtcgatgctgttctccgccacg
ctgtccttccgcgtgatggagctggcgtacgagcacatgaacaatccggaaaaggtccag
gtcgaggccgagaccctgactgccgaccgcgtgcgccaggtgatctactacccggccaac
gacgaaaagatcccgctgctcctcgggctcgcacgcgacctcaagccggagcgcgccatc
gtgttcgtgaacaccaagcacggcgccgagaaggtctgcgactggctgaacgtgaacgac
cagaaggccgcgctgctgtccggcgacgtgccgcagaacaagcgctcgcagctgctggaa
cacttcgccgctggcgaatacacctacctggtggcgaccgacgtggccgcccgcgggctg
cacatcccggcggtcacgcatgtcttcaacttcgatctgccgcagtccggcgaggactac
gtgcaccgtatcgggcgtaccgcacgtgcgggcgccgaaggtgacgcgatcagcttcggc
tgcgaggactcggccttctacctgccggatatcgagagctatctgggcgagcgcatcccc
accgcgagcgtggacccggcacgcctgttccaggatgcggtcaagccgaaaccgcgcccg
cgcaagccgcgcgacgatcgccgcggtggcccgcgctccggcggaggcggccgccccgga
ggcagccgcccgcagcgcagcggcaaccggggctga
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