Thioalkalivibrio versutus: TVD_05305
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Entry
TVD_05305 CDS
T03959
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVD_05305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvr03019
]
TVD_05305
Enzymes [BR:
tvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TVD_05305
Messenger RNA biogenesis [BR:
tvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TVD_05305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
CMS1
HI1480
P-loop_SecA
Helicase_C_2
Utp25_C
ERCC3_RAD25_C
HEM4
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKJ96426
UniProt:
A0A0G3GC47
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All DBs
Position
1134454..1135773
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AA seq
439 aa
AA seq
DB search
MTDTTFADLGLADTLLRALETSGYQHPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTL
PILQRLSTSDAPQAGNGRPRCLVLTPTRELAAQVHESVKTYGRNLKMRSMTIFGGVNMNP
QIKALRDRMDIVVATPGRLLDHANQKTIDLSGVEILVLDEADRMLDMGFIRDIKKLIAMM
PKNRQNLMFSATFSDEIRKLANGLLNNPAEIDIAPRNTTAEGVKQSVHLVETSQKRELLS
HLIRTNKWEQVLVFTRTKHGANRLAEKLSKDGVRSEAIHGNKSQAARTKALKQFKSGQVP
VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSDGAALSLVDGEEIKLL
KGIERLIQRPIDRIETEGFATPKPAANDGNGNRRGGPGGKPGGGARSGAPRNGRGGKPGG
GRGGNGRPSANGNRAARSR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgactgatacgacctttgccgacctcgggttggccgatacccttttgcgtgcgctggaa
acctccgggtaccagcacccgaccccgatccaggcccaggccatcccggaagtcctgaag
ggaggcgacctgctggccgccgcccagaccggcaccggcaagacggccggcttcaccctg
ccgatcctgcagcgcctttccacctcggatgcgccgcaggccggcaatggccgcccgcgt
tgcctggtgctgaccccgacccgcgagctggccgcgcaggttcacgaatccgtgaagacc
tacgggcgcaatctcaagatgcgctcgatgacgatctttggcggtgtgaacatgaacccg
cagatcaaggccctgcgtgatcgcatggacatcgtggtggcgacgccggggcgtctgctg
gatcacgccaatcagaagaccatcgacctgtccggtgtggagatcctggtactcgacgag
gctgatcgcatgctcgacatgggcttcatccgtgacatcaagaagctgattgcgatgatg
ccgaagaaccgccagaacctgatgttctcggcgaccttctccgacgagatccgcaagctg
gccaacggcctgctgaacaacccggcggagatcgacatcgcgccgcgcaacacgaccgcc
gagggcgtgaagcaaagcgtgcacctggtcgagaccagccagaagcgcgagctgttgagc
cacctgatccgcaccaacaaatgggaacaggtgctggtgtttacccgcaccaagcatggc
gccaatcgcctggccgagaagctgtcgaaggatggcgtgcgctccgaggcgatccacggc
aacaagagccaggcggcgcgtacaaaggcgctgaagcagttcaagtccggccaggtgccg
gtcctggtagccacggatatcgccgcgcgcgggctggacatcgaccagctgccgcaggtc
gtcaatttcgagctgccgaacgtgccggaggactacgtgcatcgcatcggtcgcaccggg
cgtgccggctccgacggcgccgcgctgtcgctggtggacggtgaggagatcaagctgctg
aagggcatcgaacgcctgattcagcgcccgatcgaccgtatcgaaaccgagggcttcgcc
acgccgaagccggctgccaatgacggcaacggcaatcgccgtggtggtccgggtggcaag
ccgggcggaggcgcccgcagtggcgccccgcgcaacggtcgcggtggcaagcccggtggt
ggtcgcggcggcaacggtcgcccgtccgccaacggcaaccgcgcggctcgcagccggtaa
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