Thioalkalivibrio versutus: TVD_07570
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Entry
TVD_07570 CDS
T03959
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVD_07570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvr03019
]
TVD_07570
03009 Ribosome biogenesis [BR:
tvr03009
]
TVD_07570
Enzymes [BR:
tvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TVD_07570
Messenger RNA biogenesis [BR:
tvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TVD_07570
Ribosome biogenesis [BR:
tvr03009
]
Prokaryotic type
rRNA helicases
TVD_07570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF5805
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AKJ95229
UniProt:
A0A0G3G4D2
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All DBs
Position
1628669..1630624
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AA seq
651 aa
AA seq
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MSDSPSFSQLGLSESLVHALSNMGFTTPTPVQAACIPALLEGRDVLGEAQTGTGKTGAFG
LPLIDLMDAGKRAPQALVLAPTRELANQVAGALTEFAREFSGIDVLPVYGGQPMGEQLRA
LRKGPQIVVGTPGRVVDHIKRGTLNLDALRVVVLDEADEMLRMGFVEEIEWILEQTPEAR
QTTLFSATMPAPIRRIAHRHMREPEEIKIGAGNEAGTDIDQSYCLVDARHKVEALTRLME
TEEDLDGAVVFARTKASTVEIADSLGQAGIAASALNGDMEQGERERVVSDLRDGRLDVIV
ATDVAARGIDVPRISHVFNFDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLKDI
ERLTGKPVREQPVPDRQAVQARRETRFAERVQALLGSEQNSGHEALVDRLLTDSGVSERE
LATALVALATAGSPLDANSTKGADPLLAAARAPYSERGDNRRDSKPRGERPSRGKDREPE
ADMVRYYMPVGRNNGVAPGAIVGALANEGGLNGRDIGRIGLRDDHSHVDLPASLDEAAIR
RLGNIHIANRKLELTLQAPRPGQAANQDDARKPAPRKTAKPRSDKPETSARAKPTSKPTP
AKRGPAPGNGKRPAYAAAPGKRPVRKGTSGPKNTGSRADGTLMIKRKAANG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattccccctccttctcccagctcgggctttccgagtcgctggttcatgccctg
tcgaacatgggcttcacgaccccgaccccggtccaggccgcctgcatccccgcgctgctg
gaaggccgcgatgttctgggcgaagcccagaccggcaccggcaagaccggcgccttcggc
ctgccgctgattgacctgatggacgccggcaagcgcgcgccccaggcactggtgctggcc
cctacgcgcgagctggccaaccaggtcgccggcgccctgactgagttcgcccgcgagttc
tccggcatcgatgtgctgcccgtctacggcggccagccgatgggcgaacagctccgcgcc
ctgcgcaagggcccgcagatcgtggtcggcacgcccggccgcgtggtcgaccacatcaag
cgcggcaccctgaacctggacgccctgcgcgtcgtggtgctggacgaagccgacgaaatg
ctgcgcatgggctttgtcgaagagatcgagtggatcctggaacagacccccgaagcgcgc
cagaccaccctgttctccgccaccatgccggcccccatccgccgtatcgcgcaccgccac
atgcgcgagccggaagagatcaagatcggtgctggcaacgaggcaggcaccgatatcgac
cagagctattgcctggtcgatgcccgccacaaggtggaggccctgacccgcctgatggag
accgaggaagacctggacggcgcggtcgtctttgcccgcaccaaggcctctacggtcgag
atcgccgattcactcggccaggccggcatcgccgcgtccgcgctgaacggcgacatggaa
caaggcgaacgcgagcgtgtggtcagtgacctgcgcgacggccgcctggatgtcatcgtc
gccaccgacgtcgccgcccgcggcatcgatgtgccgcgcatcagccacgtcttcaacttc
gacgcccccggcgatgccgaggtctacgtccaccgcatcggccgtaccggtcgcgccggc
cgcaagggccgcgccatcctgttcctggaaccgcgcaagcgccgcatgttgaaggacatc
gaacgcctcaccggcaagccggtgcgcgaacagccggtgcccgaccgccaggccgtacag
gcccgccgcgagacgcgcttcgccgagcgcgttcaggccctcctgggcagcgaacagaac
tccggacacgaagccctggtcgatcgcctgctgactgacagtggcgtatccgagcgcgaa
ctcgccaccgccctggtcgcactggccaccgccggcagcccgctggatgccaactccacg
aagggcgccgatccgctgctagcggccgcccgtgccccctattccgagcgcggcgacaac
cgccgggacagcaagccccggggcgagcgtccgtcgcgcggcaaggatcgcgagccagaa
gccgacatggtgcgctactacatgccggtcggccgcaacaacggcgtggcgccgggtgcc
atcgttggcgcgctggccaacgagggcggcctgaacggccgcgacatcggccgcattggc
ctgcgtgacgaccacagccatgtggatcttccggcgtcgctggacgaagccgcgattcgt
cgcctgggcaacatccatattgccaaccgcaagctggagctgacccttcaggccccgcgc
ccgggccaggccgcgaaccaggacgacgcacgcaagcctgcgccgcgcaagaccgccaag
ccgcgcagtgacaagccggagaccagcgccagggccaagccgaccagcaagcccacaccg
gccaagcgcggcccggccccgggcaacggcaagcgcccggcctacgccgccgcacccggc
aaacgccccgtgcgcaagggtaccagcgggcccaagaacaccggctcgcgcgcggacggc
acgctgatgatcaagcgcaaagccgccaacggctaa
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