Thioalkalivibrio versutus: TVD_10435
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Entry
TVD_10435 CDS
T03959
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVD_10435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvr03019
]
TVD_10435
03400 DNA repair and recombination proteins [BR:
tvr03400
]
TVD_10435
Enzymes [BR:
tvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TVD_10435
Messenger RNA biogenesis [BR:
tvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TVD_10435
DNA repair and recombination proteins [BR:
tvr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TVD_10435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
AKJ95747
UniProt:
A0A0G3G8A5
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All DBs
Position
complement(2258526..2260415)
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AA seq
629 aa
AA seq
DB search
MEPSGLAAGEAQGSAPAAALLEILRETFGYTEFRGQQQAIVEHVTGGGDAVVLMPTGGGK
SLCYQIPALARSGCGIVISPLIALMQDQVAALRQNGVAAASLDSGQKADEARSVLAALHA
GELDLLYMSPERLFASGMLERLEGIDLALFAIDEAHCVSQWGHDFRPEYSQLAVLAERFP
QVPRLALTATADGPTRQEIRERLCLDQARAFVSSFDRPNIRYRIAQADGGRGGSARDRLL
RFIREEHAGEAGIVYCLSRKKVDAVAEWLAEQGVTALPYHAGLPAATRAANQTRFLREEG
VVMVATIAFGMGIDKPNVRFVAHLNLPKSLEGYYQETGRAGRDGLPANAWMVFGLQDVVT
LRQMLEGSQAGAERQRVEQQKLEAMLGFCEITSCRRQALLGYFDEHMPEPCGACDNCLEP
PATWDASVPVQKLLSCIYRTGERFGAGHVIDVLRGSASERLTRLGHDRLSTFGIGKELDK
AQWRGVVRQLLARGLLRLDDEGYGGLKLDPACRPVLRGEEGIHLREEAARPEKGTRSASP
ARRDTARTVAAMDTEDRSLWEALRGLRTELARDQGVPPYVIFSDATLLEMVAAAPRTHDE
MAGISGVGQHKLERYGDAFIKAIEGHFGL
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ttggaaccctcgggtcttgcagctggagaagcgcagggaagcgctccggcggcggcgcta
ctggagatcctgcgcgagaccttcggctatacggaatttcgcggccagcagcaggcgatc
gtcgagcacgtgaccggtggtggcgacgcggtggtgctgatgcccaccggcggcggcaag
tcgctctgctaccagatcccggcgctggctcgatccggctgcggcatcgtgatctcgccg
ctgatcgcgctgatgcaggaccaggtcgccgcgctgcgccagaacggcgtggccgcggcc
agcctggactccggccagaaggcggacgaggcgcgttccgtgctggcggccctgcacgcc
ggcgaactggatctcctgtacatgtcgccagagcggctgtttgcctcgggcatgctggaa
cgcctggaaggcatcgacctcgccctgttcgcgattgacgaggcgcactgcgtctcgcag
tgggggcatgacttccgccccgaatacagtcaactggcggtgctggccgagcgctttccg
caggtgccgcgcctggccctgaccgcgaccgccgacggcccgacccgccaggagatccgc
gaacggctgtgcctcgatcaggcgcgcgccttcgtcagttccttcgaccgccccaatatc
cgctaccgcatcgcccaggcagacggcggccggggcggctcggcacgtgatcggctgctg
cgcttcatccgcgaggaacacgccggggaggcgggcatcgtgtattgcctgtcacgcaag
aaggtggacgccgtggccgaatggctggcggagcagggtgtcaccgccctgccgtatcac
gccggcctgccggccgcgacccgcgcggcgaaccagacccgcttcctgcgcgaggagggg
gtggtgatggttgccaccatcgccttcggcatgggcatcgacaagccgaatgtgcgcttt
gtcgcccacctgaacctgccgaagagtctggagggctactatcaggagaccggccgcgcc
ggccgcgatggcctgccggccaatgcctggatggtctttgggttgcaggatgtcgtgacc
ttgcgccagatgctggaggggtcgcaggccggggccgagcgtcagcgcgtcgaacagcaa
aagctggaggccatgctgggcttctgcgagatcaccagctgccgccgccaggccctgctg
ggatatttcgacgagcacatgccggaaccctgcggggcctgcgacaactgtctggagccg
ccggcgacctgggatgccagcgtgccggtgcaaaagctcctgtcctgcatctatcgaacc
ggcgagcgcttcggcgccgggcatgtgatcgacgtgctgcgcggctcggccagtgagcgc
ctgacccgtctggggcacgatcgtctgagcaccttcggcattggcaaggaactggacaag
gcgcagtggcgcggcgtggtccggcagttgctggcgcgtgggctgttgcgtctggatgac
gagggctacggcggactgaagctggatccggcctgccgcccggttctgcgcggcgaggag
gggattcacctgcgcgaggaggcggcccgtccggagaaggggacacgtagcgccagcccg
gcacggcgtgatacggcccgtacagtcgcggcgatggacaccgaggatcgctccctctgg
gaggcgctgaggggcctgcgtaccgagctggcgcgggatcagggggtgccgccctacgtg
atcttcagcgatgccacattgctggagatggtggcggccgcgccgcgcacccatgacgag
atggccgggatctccggggtcgggcagcacaagctggaacgctacggcgatgcctttatc
aaggccatcgaggggcatttcgggctatag
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