Thioalkalivibrio versutus: TVD_10875
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Entry
TVD_10875 CDS
T03959
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVD_10875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvr03019
]
TVD_10875
03016 Transfer RNA biogenesis [BR:
tvr03016
]
TVD_10875
Enzymes [BR:
tvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TVD_10875
Messenger RNA biogenesis [BR:
tvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TVD_10875
Transfer RNA biogenesis [BR:
tvr03016
]
Prokaryotic type
tRNA degradation factors
TVD_10875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
HTH_24
DUF5805
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AKJ95824
UniProt:
A0A0G3G621
LinkDB
All DBs
Position
complement(2358463..2361315)
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AA seq
950 aa
AA seq
DB search
MPRQRRKTPADPNFEREAQKYDNPIPSREFILGLLQEADNPLSYDEIAERLKIDDEDRLE
ALRRRLKAMERDGQALCNRRGAYLPVNQEDLIRGRVIGHPDGFGFLVPDEQDDDLFLSPK
QMRGVFHGDRVLARVMGVDRRGRREGGIVEVLEHNTTQVVGRLKIEDGVGILTPDNKRIT
HDILVPPDGLGEAEDDQIVVVRIRESASRTARLRGDVQEVLGEHMAPGMEIDIAIRAHAL
PHEWPDEVTAAADELGAEVAEADKKDRLDLREKPFVTIDGDDARDFDDALYCEPEGKGWR
LWVAIADVSHYVQRDAALDREARTRGTSVYFPNNVIPMLPEALSNGLCSLNPNVDRLSMI
CEMEIGARGALKSYRFHEGLIRSHARLIYEDVAAMLDGDAAQREQNAHVMPNLETLHQAF
KALHAARNRRGAIDFDTTETKIVFGEDRKIEKIVPTVRNDAHRLVEECMIMANVAAARFL
KKHKVPALYRIHDQPPSDKIDDLRDFLNGAGLSLGGGDEPSPADYTEVLKAARQRTDQQL
IQTVLLRSLSQAVYAPELDGHFGLALDDYAHFTSPIRRYPDLLVHRGIRHVLRKGSGKAF
PYSHGDMEQLGEHCSMAERRADDATRDAVAWLKAEYMQDKVGETFPGVVSGVTGFGLFVE
IKDVYIEGLVHVTSLDNDFYHFDPARHSLTGERGGRVFRIGDELQVQVARVSLDDRKIDL
ALAQEAGQPSPAAPPTKKHSRRSKRRKDADAAPVAAAAEPTAAAPEPEAKPTAAGPEAPA
ADDDAPAPKKKRRRRGGRRRGAAGGDTSPAAEPSPAKEPSSEKEPSPGNEASPGNEASPG
NEASPGNEASPGNEASPGNEASPGNEASPGNERTRGSGRGRGNARRPRNAPDEGNSDAPE
PGNEAVPPPRPEADKDGNTIVEPSADRPAKAKESSGSGRGRSRRRRPSSS
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgccaagacaacgtcgcaagacccccgccgatcccaatttcgagcgcgaggcgcagaaa
tacgacaaccccatccccagtcgcgagttcatcctcgggcttctgcaggaagccgacaat
ccgttgtcctacgacgagattgcggaacgtctgaagatcgacgacgaggatcgcctcgag
gccctgcgccgccgcctgaaggcgatggagcgcgatgggcaggccctttgcaaccgtcgc
ggtgcctatctgccggtcaaccaggaagacctgatccgcggtcgcgtgatcggtcacccg
gatggttttggtttcctggtgccggacgagcaggatgatgacctgttcctgtcgccgaag
cagatgcgcggggtatttcatggcgaccgggttctggcccgggtcatgggcgtggatcgt
cgcggccgtcgcgagggcgggattgtcgaggtcctggagcacaacaccacccaggtggtc
gggcgcctgaagatcgaggacggtgtcggcatcctgaccccggacaacaagcgcatcacc
cacgacatcctggtgccgccggacggcctgggcgaggcggaggacgaccagatcgtggtc
gtgcgcatccgtgaatccgcttcgcgcacggcgcgcctgcgtggggacgtgcaggaagtg
ctgggcgagcacatggcgccgggtatggagatcgacatcgcgatccgcgcccacgccctg
ccgcacgagtggccggacgaggtcacagcggcggccgacgagctgggcgccgaggtggcc
gaggcagacaagaaggatcgcctggacctgcgcgagaagccgttcgtcacgatcgatggc
gatgacgcccgcgacttcgacgacgccctgtactgcgagccggaaggcaagggctggcgg
ctgtgggttgcgatcgccgacgtgtcgcactacgtccagcgcgacgccgcgctggatcgc
gaggcgcgcacgcgcggcacctcggtgtacttcccgaacaacgtgatcccgatgttgccg
gaggccctgtccaatggtctgtgctcgctgaatccgaacgtggaccggttgagcatgatc
tgcgagatggagatcggtgcgcgcggggcgctgaagagctatcgcttccacgagggactg
atccgttcgcacgcccgcctgatctacgaggacgtggccgcgatgctcgacggcgacgcg
gcgcagcgcgagcagaacgcgcatgtgatgccgaacctggagaccctgcaccaggccttc
aaggccctgcacgcggcgcgcaatcgccggggcgcgatcgatttcgacaccaccgaaacc
aagatcgtctttggcgaggaccgcaagatcgagaagatcgtgccgacggtgcgcaatgat
gcgcatcgcctggtcgaggagtgcatgatcatggccaacgtggccgccgcgcgcttcctc
aagaagcacaaggtgccggccctgtaccgcatccatgatcagccgccgtcggacaagatc
gatgacctgcgcgacttcctcaatggcgcgggtctgagcctgggcggtggtgacgagccg
agccccgccgactacaccgaagtcctgaaggcagcgcgccagcgcaccgaccagcagctg
atccagaccgtgctgctgcgttcgctgagccaggccgtgtatgccccggagctcgatggc
cactttggtctggcgctggacgactacgcgcacttcacctcgccgatccgccgctatccg
gacctgctggtgcatcgcggtattcgccatgtgctgcgcaagggcagtggcaaggccttt
ccgtactcgcatggcgacatggagcagttgggtgagcattgctcgatggccgagcgacgc
gccgacgacgcgacccgcgacgcggtggcctggctgaaggccgagtacatgcaggacaag
gtcggcgagaccttccccggcgtggtctccggagtcaccgggttcggtctgttcgtggag
atcaaggacgtctacatcgagggcctggtgcacgtgaccagcctcgacaacgacttctac
cactttgacccggcacgccacagcctgaccggcgaacgcggtggccgggtgttccgtatc
ggcgacgagctccaggtgcaggtggcccgggtgagcctggatgatcgcaagatcgatctg
gccctggcccaggaagcgggccagccgagtcccgccgctccgccgacgaaaaagcacagc
cgtcgtagcaagcgccgcaaggatgccgatgcggcgccggtcgcggccgccgccgaacca
accgcagcagcgcccgagcctgaggcaaaacccacagcagccgggccggaggcgcccgcg
gccgacgatgatgccccggcgccgaagaagaagcgccgccgtcgtggtggccgccgccgt
ggggccgccggtggcgacacgagccctgctgccgagccgagcccggcgaaagaaccgagc
tcggagaaagagccgagcccagggaatgaggcgagcccggggaatgaggcgagcccgggg
aatgaagcaagcccggggaatgaagcaagcccggggaatgaagcaagcccggggaatgag
gcgagcccagggaatgaagcaagcccggggaatgaacggacccggggcagcggacgtggc
cggggcaacgcacgccgcccgcggaacgcgccggatgaaggcaacagcgatgccccggaa
ccgggcaacgaggcggttccgccgccgcgccccgaggccgacaaggacggaaataccatt
gtcgagccgagtgcggatcgcccggccaaggccaaggaatcctctgggtccggacgtggc
cgcagccgtcgtcgacgtccgtcctcgtcctga
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