KEGG   Thioalkalivibrio versutus: TVD_11440
Entry
TVD_11440         CDS       T03959                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
tvr  Thioalkalivibrio versutus
Pathway
tvr02024  Quorum sensing
tvr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tvr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TVD_11440
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    TVD_11440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tvr03019]
    TVD_11440
   03036 Chromosome and associated proteins [BR:tvr03036]
    TVD_11440
Messenger RNA biogenesis [BR:tvr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     TVD_11440
Chromosome and associated proteins [BR:tvr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    TVD_11440
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AKJ95928
UniProt: A0A0G3G3X7
LinkDB
Position
complement(2477259..2477519)
AA seq 86 aa
MAKGQMLQEPFLNALRRDRIPVSIYLVNGIKLQGQIESFDQFVVLLRSTVSQMVYKHAIS
TIVPARQVNMNLEGEAAAPASAEAES
NT seq 261 nt   +upstreamnt  +downstreamnt
atggccaaagggcaaatgttgcaggaacccttcctgaatgcgctgcgtcgggaccggatc
ccggtctccatctacctggtgaacgggatcaagctgcaggggcagatcgaatccttcgac
cagttcgtggtgctgctgcgcagtacggtctcgcagatggtgtacaagcacgccatctcc
acgatcgtgccggcccgtcaggtgaacatgaatctcgagggcgaggcagcggctcccgcc
tccgccgaggccgagtcctga

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