Thioalkalivibrio versutus: TVD_11440
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Entry
TVD_11440 CDS
T03959
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr02024
Quorum sensing
tvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVD_11440
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
TVD_11440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvr03019
]
TVD_11440
03036 Chromosome and associated proteins [BR:
tvr03036
]
TVD_11440
Messenger RNA biogenesis [BR:
tvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
TVD_11440
Chromosome and associated proteins [BR:
tvr03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
TVD_11440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AKJ95928
UniProt:
A0A0G3G3X7
LinkDB
All DBs
Position
complement(2477259..2477519)
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AA seq
86 aa
AA seq
DB search
MAKGQMLQEPFLNALRRDRIPVSIYLVNGIKLQGQIESFDQFVVLLRSTVSQMVYKHAIS
TIVPARQVNMNLEGEAAAPASAEAES
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagggcaaatgttgcaggaacccttcctgaatgcgctgcgtcgggaccggatc
ccggtctccatctacctggtgaacgggatcaagctgcaggggcagatcgaatccttcgac
cagttcgtggtgctgctgcgcagtacggtctcgcagatggtgtacaagcacgccatctcc
acgatcgtgccggcccgtcaggtgaacatgaatctcgagggcgaggcagcggctcccgcc
tccgccgaggccgagtcctga
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