Trametes versicolor: TRAVEDRAFT_115078
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Entry
TRAVEDRAFT_115078 CDS
T04795
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3
KO
K11088
small nuclear ribonucleoprotein D3
Organism
tvs
Trametes versicolor
Pathway
tvs03040
Spliceosome
tvs04139
Mitophagy - yeast
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRAVEDRAFT_115078
09140 Cellular Processes
09141 Transport and catabolism
04139 Mitophagy - yeast
TRAVEDRAFT_115078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_115078
03041 Spliceosome [BR:
tvs03041
]
TRAVEDRAFT_115078
03032 DNA replication proteins [BR:
tvs03032
]
TRAVEDRAFT_115078
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
TRAVEDRAFT_115078
Spliceosome [BR:
tvs03041
]
Complex A
U1 snRNP components
Sm proteins
TRAVEDRAFT_115078
U2 snRNP components
TRAVEDRAFT_115078
Complex B
U1 snRNP components
TRAVEDRAFT_115078
U4/U6.U5 tri-snRNP components
TRAVEDRAFT_115078
Complex C
U2 snRNP components
TRAVEDRAFT_115078
DNA replication proteins [BR:
tvs03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
TRAVEDRAFT_115078
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
19407268
NCBI-ProteinID:
XP_008034142
JGI:
115078
LinkDB
All DBs
Position
Unknown
AA seq
131 aa
AA seq
DB search
MATSGLGIPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQ
LDQVYIRGSMVRFFIVPDMLQNAPMFKRVGPNAMKGRGIGTARGRATIMRALTIFAARRG
RGVPAARGIRR
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcaggactcggaattcccgtcaagctcctccacgagtcccttggacatgtc
attaccgtcgagctcaaaactggccagctataccgcggcaagcttgccgaggccgaggac
aacctgaacatctcgctgaaggacatcaccgtgacgcaacgcgacgggcgtgtgtcccag
ctggatcaggtgtacatcaggggaagtatggtcagattcttcattgtcccggacatgctg
cagaacgcgcccatgttcaagcgtgtgggaccgaacgcgatgaaaggaaggggtattggt
acggcgcgtggaagggcaacgatcatgcgggcgctgactatatttgcagcgcgccgcggt
cgtggtgttcccgccgcaagaggcatccgtcgatga
DBGET
integrated database retrieval system
