Trametes versicolor: TRAVEDRAFT_116781
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Entry
TRAVEDRAFT_116781 CDS
T04795
Name
(RefSeq) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
tvs
Trametes versicolor
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tvs03016
]
TRAVEDRAFT_116781
Enzymes [BR:
tvs01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
TRAVEDRAFT_116781
Transfer RNA biogenesis [BR:
tvs03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
TRAVEDRAFT_116781
Prokaryotic type
TRAVEDRAFT_116781
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-GeneID:
19407394
NCBI-ProteinID:
XP_008035761
JGI:
116781
LinkDB
All DBs
Position
Unknown
AA seq
805 aa
AA seq
DB search
MQRIMETDVGISEYIGHDVPAIEGIIKQRFTDFLVFEVDLDGQVIHLKSLGMPESSKKAA
DAKATATAGNTPASSSAQQATGDDKMAEDAQAKPDAQAEAPAAEAAAEVPTPRAEAEPTV
TEEVPKDDEPWPERFTESLKPFLAEDVITRVKTLYLEGPEPPFVSDSGWGGRGKAGGSGE
PSDPAASTEPAVAPEPEGRGKRGRDRGRGGRGGRGGRGGARGGRPGAREDTRKVLSNPIA
SKETRTGLHQAIRDLFKGKLDTETDTSAPASDEGSRIVIKWSKRGGGGGRGGRGGGRGAR
PDAGGGGERGGYPPYIHFTLQKTNRDTQDALAALSRTLHCNVKDLSVAGTKDKRGVTVQR
VSLRRGNKTVEDVWKMANGQNGKRTTEEILSQRGERGVRVADFNYRKASLELGMLKGNAF
VITLRTVRVDSMETLDRAMNTIKNKGFINYYGMQRFGTASIPTHSIGLALLKGDWHRAVS
LILRNRPGEHPDVVAARNAWLVEGDLDKAIELMPRRVVAERCILESYRKQDGDTRNAMGS
LSTIPRNLRLMYVHAYQSYVWNAIVSERIRMHGADKPVVGDLVFDETTAKVEDAEDVAEI
ALDGVEGDVPLEDKAANEDADGAAGRSGRRSRKAWEPPKVKVLAEADLDKYSIFDVIMPL
PGKDVDYPGGRLGERYREFLRKDGLDPDNWVRKQKDYSLGGSYRKILHLPKELSWTAMRY
TDPDVPLAQSDEDKLLGMPPPATVEDGKFLALQVNLQLGTAAYATMALREVTKTETSSHF
QTTLTQASEDQKYRTTEGVADAGTE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcatcatggagacggacgtcggcatctccgagtacatcgggcacgacgtgccg
gcgatcgagggaatcatcaagcagaggtttacagactttctggtgtttgaggtagacttg
gacggacaagtgatacacctgaagtcgctcggcatgcccgagtcctcgaagaaagccgcg
gatgcgaaagcaacggcaacggctggaaacacccctgcctcatcatctgcacagcaagct
acaggagatgacaagatggctgaagatgcgcaggccaagccagatgcgcaggcagaggcc
cccgctgcagaggcagctgccgaagtacccaccccgagggccgaggcagaaccgaccgtg
acggaggaggttcccaaggatgacgagccttggccggagcgcttcacagagtcactaaaa
ccgttccttgcggaggacgtgatcactcgcgtgaaaacgctgtacctggaaggccctgag
ccgcctttcgtgagcgacagtggctggggcgggcgaggcaaggccgggggaagcggcgag
ccttctgaccccgcagcatctaccgagcctgctgttgcacctgagcctgaagggagaggc
aagcgtgggcgagaccgcggaagaggtggtcgcggcgggcgcgggggacgaggaggcgca
aggggcggcagaccgggtgccagagaggacactcgcaaagtattgtctaatccgatcgct
tccaaagagactcgcactggtcttcaccaagccatccgcgacttgttcaagggtaaactt
gacactgagacggatacgagtgcgcctgcttcagatgaaggctcgcgcatcgtcataaaa
tggagcaaacgcggaggtggaggtgggcgtggtggtcgcggtggcggacgaggagcgcga
ccagacgctggtggtggtggagagcggggcggatatccgccttacatacacttcacattg
cagaagacgaaccgggacactcaggacgcgctggcggccctctcgcgcactctccactgc
aatgtcaaagacttgtccgtcgcagggacaaaggacaagcgtggtgtgacggtccagcgc
gtgtcattaagacgcggtaacaagaccgtggaggatgtgtggaagatggccaacggtcaa
aacggcaagcggacgacggaggaaatcctatcgcagcggggagagcgtggtgtgcgggtt
gccgacttcaactacagaaaagcgagcttggagctgggtatgctcaaggggaacgccttt
gtgatcacgctccgcaccgttcgagtcgactctatggagacattagaccgggccatgaac
acgatcaagaacaagggcttcataaactactacggcatgcagcgcttcggcacggcgtca
atccctacccattcgatcggcctcgctctgctgaagggcgactggcacagggctgtttct
ctcatcctccgcaatcgaccaggagagcatcccgacgtcgtcgcggcccggaatgcatgg
ctcgtggagggggacctggacaaggccattgagttgatgcctcgtcgcgtggtcgccgag
cggtgcatcctggaaagctacaggaagcaggacggcgacacgagaaacgccatgggctcc
ttgtccacgatccctcgtaacctgcggttgatgtacgtgcacgcataccagtcgtatgtg
tggaacgccatcgtctccgagcgcatcaggatgcacggcgcagacaagcccgtcgtcggc
gacctcgtcttcgacgagaccaccgccaaggtcgaagacgccgaagatgtcgcggagatc
gccctcgacggggtcgagggagacgttcccctggaggacaaggcggccaatgaggacgcg
gacggggccgcgggaagatcaggcaggcgatcgaggaaggcttgggaaccgccgaaagtc
aaggtcctggcggaggcggatctagacaagtacagcatatttgacgtgatcatgcctcta
cctggtaaggacgtcgactaccccggtggtcggttgggcgagcggtacagggagttcttg
aggaaggacggccttgaccccgacaactgggtgcgcaagcagaaggactactcgttagga
ggttcataccgcaagatcctccacctgccaaaggagctgtcgtggaccgcgatgaggtac
accgacccggacgtccctctggcacaatcagatgaagataagctgcttggcatgcctccg
ccggctactgtcgaggatggcaaattcctggccctccaagtgaacctgcagctcggtacc
gctgcgtatgccacgatggcgttgcgcgaagttaccaagaccgagacaagttcacacttc
cagacgacgctcacacaagcgtctgaagaccaaaaatacagaacaaccgagggcgtggca
gatgcaggcacagagtag
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integrated database retrieval system
