Trametes versicolor: TRAVEDRAFT_127853
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Entry
TRAVEDRAFT_127853 CDS
T04795
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
tvs
Trametes versicolor
Pathway
tvs03018
RNA degradation
tvs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRAVEDRAFT_127853
09123 Folding, sorting and degradation
03018 RNA degradation
TRAVEDRAFT_127853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_127853
03041 Spliceosome [BR:
tvs03041
]
TRAVEDRAFT_127853
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TRAVEDRAFT_127853
mRNA degradation factors
5'-3' decay
Lsm complex
TRAVEDRAFT_127853
Spliceosome [BR:
tvs03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TRAVEDRAFT_127853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
19408234
NCBI-ProteinID:
XP_008040593
JGI:
127853
LinkDB
All DBs
Position
Unknown
AA seq
94 aa
AA seq
DB search
MDKPKREAILDLAKYVNERIRVKFTGGREVTGILKGYDQLLNLVLDEVQENLQTPDGEST
TRNLGLVVLRGPTITLLSPVDGFEEIANPFLAQE
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcccaagcgtgaggccatccttgacctggccaagtacgtgaacgagcgtatt
cgcgtcaaattcacgggcggacgcgaagtgaccggaatcctgaagggttacgaccagctg
ttgaacctcgtgctggatgaagtacaggaaaatttgcagacaccggacggcgagtccacc
acgcgcaacctgggccttgtagtcctcagagggccgacaatcaccctcctaagccccgtg
gacggcttcgaggagatcgccaaccctttcctggcacaagagtga
DBGET
integrated database retrieval system
