Trametes versicolor: TRAVEDRAFT_139212
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Entry
TRAVEDRAFT_139212 CDS
T04795
Name
(RefSeq) exosome non-catalytic core subunit CSL4
KO
K07573
exosome complex component CSL4
Organism
tvs
Trametes versicolor
Pathway
tvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRAVEDRAFT_139212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_139212
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TRAVEDRAFT_139212
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TRAVEDRAFT_139212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
Motif
Other DBs
NCBI-GeneID:
19409102
NCBI-ProteinID:
XP_008032897
JGI:
139212
LinkDB
All DBs
Position
Unknown
AA seq
185 aa
AA seq
DB search
MSSDTVLPGQPIPLPRGPVPQLGGGTYIRDGTVRASLVGVPQYSGSTLEIKRTRPHPPAP
NSVVLGSVTRLSPLQAVLSISVVDGVPLPAGEEFTGVIRVQDVRATEKDKVKIADCFRGG
DVIRGLVLSLGDARSYYVTTARNDLGVIFATSEAGATMEPVSWQEMRCPKTGKIEKRKCA
KPEGM
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccgacaccgttctcccaggccagccaatcccgctcccgcgggggcctgtcccg
cagctcggcggcggtacctacatccgcgatggcaccgtcagggcaagtctcgtcggcgtc
cctcagtactcaggatctactttggaaatcaagcgcacgcgccctcacccaccagctccg
aactccgtcgtgcttggctctgtcacccgcttgtcgcctctgcaggctgttttgtcgatt
agtgtcgtagacggcgtgcctctaccggcaggcgaagagttcactggcgtcatccgtgtg
caagatgtccgggcgaccgagaaggacaaagtaaaaattgccgactgttttcgtggaggg
gacgttattagaggtcttgtgctttctttgggggatgctcgcagctactatgtcaccact
gctcggaatgaccttggggttattttcgccactagcgaagctggtgccacgatggaaccc
gtctcgtggcaagaaatgcgttgtccaaagaccggtaaaatcgagaagcgtaaatgcgct
aagccggaaggcatgtag
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integrated database retrieval system
