KEGG   Trametes versicolor: TRAVEDRAFT_140854
Entry
TRAVEDRAFT_140854 CDS       T04795                                 
Name
(RefSeq) LSM-domain-containing protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
tvs  Trametes versicolor
Pathway
tvs03018  RNA degradation
tvs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tvs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TRAVEDRAFT_140854
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TRAVEDRAFT_140854
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tvs03019]
    TRAVEDRAFT_140854
   03041 Spliceosome [BR:tvs03041]
    TRAVEDRAFT_140854
Messenger RNA biogenesis [BR:tvs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TRAVEDRAFT_140854
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TRAVEDRAFT_140854
Spliceosome [BR:tvs03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TRAVEDRAFT_140854
SSDB
Motif
Pfam: LSM SM-ATX SAF
Other DBs
NCBI-GeneID: 19409197
NCBI-ProteinID: XP_008033418
JGI: 140854
LinkDB
Position
Unknown
AA seq 98 aa
MDESTPPPPAAPAEPSPPPPPMTSGSPTDFLKGVVGKRVVVRLTSGVDYRGILSCLDGYM
NIALEQTEEHVNGRVTNKYGDAFIRGNNVLYISAAEAL
NT seq 297 nt   +upstreamnt  +downstreamnt
atggacgagtctactccccctccccctgctgcacccgctgagccgtcgcctccccctcca
cctatgacctctggctcgccgaccgactttttgaagggagtggtcggcaaacgcgtcgtc
gttcggttgacctctggggtagactatcgagggatactttcatgtctggatggttacatg
aacatcgccttggagcagacggaggagcatgtcaacgggagagtcacgaacaagtacgga
gacgcgttcatcagaggaaacaatgtactgtacatctccgcggccgaagccctatag

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