Trametes versicolor: TRAVEDRAFT_145600
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Entry
TRAVEDRAFT_145600 CDS
T04795
Name
(RefSeq) histone deacetylase RPD3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tvs
Trametes versicolor
Pathway
tvs03082
ATP-dependent chromatin remodeling
tvs03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
TRAVEDRAFT_145600
03083 Polycomb repressive complex
TRAVEDRAFT_145600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tvs03036
]
TRAVEDRAFT_145600
Enzymes [BR:
tvs01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
TRAVEDRAFT_145600
Chromosome and associated proteins [BR:
tvs03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
TRAVEDRAFT_145600
HDAC complexes
Sin3A-HDAC complex
TRAVEDRAFT_145600
BRAF-HDAC complex
TRAVEDRAFT_145600
REST complex
TRAVEDRAFT_145600
SHIP complex
TRAVEDRAFT_145600
MiDAC complex
TRAVEDRAFT_145600
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
TRAVEDRAFT_145600
Heterochromatin formation proteins
Other heterochromatin formation proteins
TRAVEDRAFT_145600
Chromatin remodeling factors
NuRD complex
TRAVEDRAFT_145600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
19409461
NCBI-ProteinID:
XP_008036698
JGI:
145600
LinkDB
All DBs
Position
Unknown
AA seq
555 aa
AA seq
DB search
MSKRRVTYYYDPDVGAFTYGLTHPMKPQRMRATHELLTAYDMLPRMHVLRAKRASAETMT
RFHTDEYVQFLSRVTPENAPQLSYQGTRFLVGEDNPAFDGVFEFCSISAGGSLAAAHRLM
NGQTDIAINWAGGLHHAKKREASGFCYVNDIVLAILEMLRTVPRVLYIDIDCHHGDGVEE
AFYTTNRVMTCSFHKFGEYFPGTGTLDDRGRGKGRGYAVNVPLKDGVTDEAYRSVFEPVI
DKILDVFQPSAIVLQCGADSLSGDKLGCLNLTMQGHASCVQYIRKKNIPLMLLGGGGYTV
KNVARTWTYETACALGIENDIDLNMPWNEYFEWFGPRYRLEVPASNMEDMNLRDNSLDRV
RETALRYLSELRPAPSVGLQDVPRESVGEHLGVGDAYEQGPLDDLDEKLARHTRFVYNLQ
DRAAQPDSDSEYDSDTSLARTRARSNPARRGKKRMSLLTGECFDVPRPPPEGYDLGCGHE
PWAAGDMPAQGMKRKFFSSAARWEDALDRHLAERDRAGMRNGRVNVGGLMTNGGGAERAR
TAELGEEMDVDAEDD
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacggcgcgtcacctactactacgaccccgatgtcggtgcgttcacatatggc
ctcacacatcccatgaagccgcaacgcatgcgcgcaacacacgaactcctcaccgcatat
gacatgcttcccaggatgcacgttcttcgcgcaaaacgcgcgtccgcggagaccatgaca
aggtttcataccgatgagtacgtgcagttcttgtcgcgcgtcaccccggagaatgcgccg
cagttgtcctatcaaggaacgcgcttcctagtcggagaggacaaccccgcgttcgacggt
gtgttcgagttctgctcgatctcggcgggcggttcattagctgcggcgcaccgtctcatg
aacggccagaccgacatcgcgatcaactgggccggcgggctgcaccacgcgaagaagcgc
gaggcgtccggcttctgctacgtgaacgacatcgtgctcgcgatcctcgagatgctccgc
accgtcccgcgcgtgctctacatcgacatcgactgccaccacggcgacggcgtcgaggag
gcgttctacaccacaaaccgcgtcatgacctgctccttccacaagttcggcgagtacttc
cccggcacgggcacgctcgacgacaggggccgcggcaaggggcgcggctacgccgtgaac
gtgccgctcaaggatggggtcacggacgaggcgtacaggagcgtgtttgagccggtcatc
gacaagatcctcgacgtgttccagccgtccgcaattgtcctgcagtgcggcgcggactcg
ctctctggcgacaagctgggctgcttgaacctcacgatgcagggacacgcgagctgcgtg
cagtacatccgcaaaaagaacatcccgctcatgttgctgggcggtggagggtacacggtc
aagaacgtcgcgcggacgtggacgtacgaaaccgcatgtgcgctgggtatcgaaaacgac
atcgaccttaatatgccctggaacgagtattttgagtggtttggcccgcgatatcggctg
gaggtccccgcgagcaacatggaggacatgaatctaagggacaactcgttggacagagtg
cgggagacagcactccggtatctctcagagctgcgtccagcgccctcggtagggctgcag
gacgtgccccgagaaagcgtaggcgagcacctcggcgtcggggacgcctacgagcaaggc
cccctagacgacctcgacgagaaactagcccgacacacgcggttcgtctacaacctgcaa
gacagggccgcgcagcccgactccgactccgaatacgactcggacacctctctcgcacgc
acgcgcgcccgctccaacccggcgcgccgcgggaagaaacgtatgagcctccttacaggc
gagtgcttcgatgttccgcgaccgccgccagagggctacgacctcgggtgcgggcacgag
ccctgggcggcgggcgacatgcccgctcagggcatgaaacgcaaattcttttcgagcgcg
gcgcgttgggaggacgcgctagatcgacacctcgcggagcgggaccgggcagggatgcgg
aatgggcgggtcaacgtgggcgggctcatgacgaatggtggtggggctgagcgggcgcga
accgctgagcttggggaggagatggacgtcgacgcggaggacgactga
DBGET
integrated database retrieval system
