Trametes versicolor: TRAVEDRAFT_155656
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Entry
TRAVEDRAFT_155656 CDS
T04795
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tvs
Trametes versicolor
Pathway
tvs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRAVEDRAFT_155656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvs03041
]
TRAVEDRAFT_155656
03009 Ribosome biogenesis [BR:
tvs03009
]
TRAVEDRAFT_155656
Enzymes [BR:
tvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRAVEDRAFT_155656
Spliceosome [BR:
tvs03041
]
Complex A
U2 snRNP components
U2 related factors
TRAVEDRAFT_155656
Complex B
TRAVEDRAFT_155656
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
TRAVEDRAFT_155656
Ribosome biogenesis [BR:
tvs03009
]
Eukaryotic type
90S particles
Helicases
TRAVEDRAFT_155656
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
SRP54
AAA_19
nSTAND3
T2SSE
Flavi_DEAD
ABC_tran
AAA_7
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
19410031
NCBI-ProteinID:
XP_008044417
JGI:
155656
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MASYNPYTARPPVSDSPAPALGSKDPLFGFLPRKVTSEQALKAMESDTNPFSKKPHSAQY
KKILQDRKKLPVFSQMDQFLKMFSQNQIIVMVGETGSGKTTQIPQFVCYSDLPHTKGKLV
ACTQPRRVAAMSVAKRVADEMDVQLGKQVGYSIRFEDMTEPGTTFLKYMTDGMLLREAMN
DNELSRYSTIILDEAHERTLATDILMGLLKDIAKRRSDLKIVVMSATLDAQKFQKYFSLT
GAENPAPLFKVPGRTHPVEVFYTQEPEPDYVEAAIRTVLMIHRAEDPGDILLFLTGEEEI
EDACRKIKLEADDLLNQDPDSVGPLVCIPLYSSLPPQQQQRIFDPAPSPRVPGGPAGRKV
VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR
PGKCFRLYTEKDFMTELEEQTHPEILRSNLANTVLELAKLGIDDLVHFDYVDAPAPETLM
RALELLNFLAALDDEGKLTHLGSIMADFPLDPQMGKMLIASPEFNCSNEVLTIVAMLSVP
NVWLRPPNQRKEADAAKALLTVPDGDHLTMMNVYNHYVNNKHDKNWCWNNYLSARALQQA
ENVRTQLLRTMERYEIELVTTQDERKLWTNIRKALVCGFFMQVAHKEGEKSNYLTVKDNQ
VVSLHPSCGLDTSPEWVLFNEFVLTTKPYIRTVTEVKPEWLLEYAQSYYDPATFPEGETK
RALFRKRRAAGEDGTASAKASRSGTPATVDRSKKRPRKA
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtacaatccatacacagccaggccaccggtatcggactcccctgcgcccgca
cttggcagcaaggacccactatttggctttcttccgcgcaaggtcacctcggagcaggcg
ctgaaggccatggaaagcgacaccaaccccttcagtaaaaagccacactctgcccagtac
aagaagatccttcaggaccgcaagaagctccctgtgttctcgcagatggaccagttcctc
aaaatgttcagccagaaccagattatcgtcatggtcggcgagacgggttcaggcaagact
actcagataccccaattcgtctgctattcggatctgccacatacgaagggcaagctggtg
gcgtgtacacaacctagacgagtcgccgccatgtccgtcgcgaaacgtgtcgcggacgag
atggatgtacagctcgggaagcaagtcggttactctatccgtttcgaggacatgacagaa
cccgggaccaccttcttgaagtacatgaccgatggtatgctgctccgagaagccatgaac
gacaacgaactcagccggtattccacgatcatcctcgacgaggcccatgaacgtacacta
gcaacggatattctcatgggtctactaaaggacattgcgaagcggcgctccgacctcaag
atcgtcgtcatgtccgcaacgctcgacgctcagaaattccagaaatacttcagcttgact
ggagctgagaacccggcgccgctgttcaaggtaccaggtcggacgcatccagtagaggtg
ttctacacgcaggagccagagccggactacgtcgaagccgcgattcggacggttctcatg
atccaccgcgcagaggaccctggcgacatccttcttttcctcaccggtgaggaggagatc
gaggacgcgtgcagaaaaatcaagctcgaggcggacgaccttctcaaccaagatccagac
agtgtcggccccctcgtgtgcataccgctctactcgtctctccccccacaacagcagcag
cgtatcttcgaccctgccccttctccccgcgttcccggcggcccggccggacggaaggtc
gtcatttcgacaaatatcgccgaaacgtccctcaccatcgacggcatcgtttacgtcgtc
gatcccggcttctcgaaacagaaggtctacaacccgcgtatccgtgtcgagtccctgcta
gtctcgcccatttccaaggcgtccgcacaacaacgcgcgggtcgcgcgggtcgtacgcgc
cccgggaagtgcttccggctgtacacggagaaggacttcatgacggagctagaggagcag
acgcaccctgagatcctgcgaagtaacctcgcgaacacagtgcttgagctcgcgaagctg
ggcattgacgatctggtgcacttcgactacgtcgacgcgcccgccccggagacgctcatg
cgcgcgctggagctgctgaacttcctcgccgcgctggacgacgaggggaagctgacacac
ttgggctcgatcatggcggacttcccgctcgacccgcagatggggaagatgctgattgcg
agcccggaattcaactgcagtaatgaggttttgacaatcgtcgcgatgctgtctgtcccg
aacgtatggctcaggccgccaaaccagcgcaaggaggctgatgcagcgaaggcgctgctt
accgtccccgacggcgaccatctcaccatgatgaacgtgtacaaccactacgtcaacaac
aagcacgacaagaactggtgctggaacaactacctctccgcgcgcgcgctgcagcaggcg
gagaacgtgcgcacgcagctgctgcgcacgatggagcggtacgagatcgagctcgtgacg
acgcaggacgagcgcaagctgtggacgaacatccgcaaggcgctcgtctgcggcttcttc
atgcaggtcgcgcacaaggagggcgagaagagcaattacctgaccgtgaaggacaaccag
gtcgtgtcgctgcacccgagctgcgggctcgacacgagcccggagtgggtgctgttcaac
gagttcgtgctcacgacgaagccgtacatccgcactgtcacggaggtcaagccggagtgg
ttgctggagtacgcgcagagctattacgacccggcaacgttccccgaaggcgagacgaag
cgggcgctgttccgcaagaggcgcgcagccggagaggatggcaccgcgagcgcgaaggcg
agcagatcgggcacccctgctacagttgaccgaagcaagaagaggccgcggaaggcctga
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integrated database retrieval system
