Trametes versicolor: TRAVEDRAFT_158884
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Entry
TRAVEDRAFT_158884 CDS
T04795
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tvs
Trametes versicolor
Pathway
tvs03082
ATP-dependent chromatin remodeling
tvs03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
TRAVEDRAFT_158884
03083 Polycomb repressive complex
TRAVEDRAFT_158884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tvs03036
]
TRAVEDRAFT_158884
Enzymes [BR:
tvs01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
TRAVEDRAFT_158884
Chromosome and associated proteins [BR:
tvs03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
TRAVEDRAFT_158884
HDAC complexes
Sin3A-HDAC complex
TRAVEDRAFT_158884
BRAF-HDAC complex
TRAVEDRAFT_158884
REST complex
TRAVEDRAFT_158884
SHIP complex
TRAVEDRAFT_158884
MiDAC complex
TRAVEDRAFT_158884
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
TRAVEDRAFT_158884
Heterochromatin formation proteins
Other heterochromatin formation proteins
TRAVEDRAFT_158884
Chromatin remodeling factors
NuRD complex
TRAVEDRAFT_158884
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
NIL
Motif
Other DBs
NCBI-GeneID:
19410234
NCBI-ProteinID:
XP_008032944
JGI:
158884
LinkDB
All DBs
Position
Unknown
AA seq
538 aa
AA seq
DB search
MPPEMIPIDGEQKKRVCYFFDSDVSGFHYGPGHPMKPTRIRMCHSLVMNYGLYKRMEIFR
AKPATKREMTQFHSDEYVDFLSKITPVNMNSFIKEQHKCNVGDDCPVFDGLFDYCAISAG
GSMEGAARLSRDKCDIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLRYHPRVLYIDI
DVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGELRDVGIGKGKYYALNFPLRDGITNE
NYKSVFEPVIQQVMESYDPGAVVLQCGTDSLSGDKLGCFNLSMRGHANCVKFVKSFNKPL
LLVGGGGYTMRNVSRCWAYETGLAAGVELGKEIPMNEYYEYFGPDYELDVKSSNMDDMNS
PEYLERVKGIVLEHLRHVGGPPSVQMQDVPRMPVDELVEDDPDEDMDDPNDRRPTRRLDA
RRQADGELSDSDDEGEGGRRNHASHKDADSPTTGRRFGAPVGIMSTGTTHGVGPSGAPPV
AAATAGPSAGQAAVAEQSDMDIDDGVPLAQAAKNKAAAPAPTTNGAGPAPNKDEAERP
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctgagatgatccccatagacggggagcagaagaagcgcgtatgctacttcttc
gactcggacgtgagcggtttccattatgggccaggccacccgatgaaacctacgcgtata
cggatgtgccattcattggtcatgaactacggcctgtacaaacgcatggagatcttcaga
gccaaacctgccacaaagcgcgaaatgacgcagttccactctgacgaatatgtcgatttc
ctgagcaagatcacgcctgtcaatatgaactcgttcattaaggaacagcacaagtgcaat
gtcggggacgattgcccagtgtttgatggcttgtttgactattgcgctatctcagccggc
ggctctatggagggcgccgctaggctaagcagggacaagtgcgacattgcagtgaactgg
gccggaggtttgcaccatgccaagaagagtgaggccagtggtttctgctacgtcaacgac
attgtattgggcattcttgaacttctgaggtatcatcctcgtgtcctctacattgacata
gacgtgcatcacggagatggagtggaggaggctttctacactacagatcgcgtgatgacc
gtcagcttccacaagtacggcgaatacttcccaggaacgggagagctgcgggacgtaggc
ataggcaagggcaagtactacgctctcaatttcccgttgcgagatggcatcaccaacgag
aactacaagagtgtctttgagcctgtcattcaacaagttatggaatcgtatgatcccggc
gccgtcgtgttgcaatgcggcacggactcactatcaggggacaagcttggctgcttcaac
ctgtcaatgcgaggtcacgcaaattgtgtgaagttcgtcaagtcattcaacaagcccctg
ctcctcgttggtggtggcggctacaccatgcgcaatgtgagcagatgctgggcttacgag
accggtcttgcagcgggtgttgagcttggcaaagaaatacccatgaacgagtactacgag
tacttcggcccggactacgaactagacgtgaagtcgtccaacatggacgacatgaactct
cccgaatacctggaacgtgtaaaaggcattgttctcgagcatttgcggcatgttggcggc
ccgccgagcgtccagatgcaggacgttccgcggatgcccgtcgacgagctggtcgaagac
gacccagatgaagacatggacgaccccaacgacagacggccaactcgccgtctcgacgcg
cgccgacaggcagacggcgagctctccgactccgatgacgaaggggagggagggcggcgc
aaccacgccagccacaaggacgccgactctccaacgacagggcggagattcggcgcgcca
gtcgggattatgagcacgggcactacacatggtgtagggccgagcggcgcgccgccggtc
gctgcggccacagctggtccgtctgcaggacaggctgccgtcgcggaacagtccgacatg
gacatcgacgacggcgtcccgcttgcacaggcggcgaagaacaaggctgcggcacccgcg
cccaccacgaacggcgctggccctgcgcccaacaaggatgaagcagagcgtccatag
DBGET
integrated database retrieval system
