Trametes versicolor: TRAVEDRAFT_162694
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Entry
TRAVEDRAFT_162694 CDS
T04795
Name
(RefSeq) uncharacterized protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tvs
Trametes versicolor
Pathway
tvs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRAVEDRAFT_162694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_162694
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TRAVEDRAFT_162694
U7-dependent histone pre-mRNA processing factors
TRAVEDRAFT_162694
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Motif
Other DBs
NCBI-GeneID:
19410541
NCBI-ProteinID:
XP_008035425
JGI:
162694
LinkDB
All DBs
Position
Unknown
AA seq
943 aa
AA seq
DB search
MITFTPLSGAAGTVRTVPLAYLLQVDDVRILLDCGSPDWCPEPSSEEGDDVLSWTKYCDA
LKECAPSVDLVLLSHGDLSHSGLYPYAYSHWGLTAPAYTTLPIQAMAKTAATEDVEAIRD
EQPVEDIAPPSEESLAPEGSVSPSPNNATPPASSPTPSPSSRAVKHRYVATVQQVHDAFD
SVNVLRYSQPCHLQGKCQGLTIIPFNAGHTLGGTIWKIRSPSAGTILYAVDMNHMRERHL
DGTVLIRQGSTGGVFESLARPDLLITDAERANVTTARRKDRDSALLDCVTATLSSRNSLL
LPCDSSTRVLELLVLLDQHWNYSRLKYPICLLSRTGREMLTFVRSMMEWLGGTISKEDVG
EDGTNHGRDRRRRDEDNDEEALGAFALRFRHLEFFSSPQALMSTYSTKDPKLILAVPATL
SHGPSRSLFAHFAEIPDNVVLLTGRSEPGTLGRILFDKWNNSQREEAKWDRGKIGNNIMM
DGVLRLEIHKKVPLQGDELEEFLAKERAVKEKEAAHQAALARTQRMLEADEGQSDSDSDD
EDESDDDEEDEVERELGEDLMDATDDLKRSRQGPNATTRSGTKRKRGEGGGGDGTDWVLG
NEADEGATRISFDIYLKGNVAKATSFFKSADGQTQRFRMFPYVEKKRKVDEYGETVDVGT
WLRKGKVLEEDAEDEETKDARRRKEEEEAKKAPQEPPSKFVTSIAEVQLACRLFFVDLEG
LNDGRAVKTIVPQVNPRKMILIHAPQAATDALIESCANIRAMTKEIYAPAQGETVQIGQQ
TNSFSISLSDELLASIKMSRFEDNEVGYVAGRIASLATSMIPVLQPASSASLQTQAASLQ
PVQVRMLGSRPKQPLPQSTMIGELKLTSLKARLAQVGVQAELVGEGVLICGAAAKKGASA
DALEDSVAVRKTGRGRVELEGSISDIYYKVRKEIYALHALVAA
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgatcacatttactcctctgtcgggtgcagctggcacggtccgtacagttcctttggca
tacttgctgcaggtcgacgacgtccggattctactggactgcgggtctccggactggtgt
cctgaaccgtcttccgaggagggagatgacgtcctatcatggacaaagtactgtgatgct
ttgaaggaatgtgccccctccgttgaccttgttctgctctcacatggcgacctgtctcac
tcgggtctctacccttacgcgtactcgcactggggtcttaccgcgcctgcgtacacgacg
ctccccatccaggctatggcgaaaactgctgcgaccgaagacgtcgaggccatccgtgac
gagcaaccggtggaggacatcgcacctccctccgaggaaagccttgcaccagaaggttca
gtctccccatccccaaataacgcaactcccccagcctcttctccgacaccctccccctcc
tcacgtgctgtgaagcacagatacgtcgctactgtgcagcaagttcacgatgcatttgac
tctgtgaacgtcttgcggtactcccaaccgtgtcatcttcaaggaaaatgccagggcttg
accatcatcccgttcaacgctggccatactctgggtggcacaatctggaaaattcgctcc
ccttcagcagggacgattctctatgctgttgatatgaaccacatgcgagaaagacatctt
gacggcaccgttctcatccgccaaggctcgactgggggagtcttcgagagcctggcacgt
ccggatcttctcattactgacgctgaacgtgccaatgtgactactgcacggaggaaagac
agagattccgccttgctagattgcgtcaccgctaccctctcttcccgcaactcgttgctg
ctgccttgtgactcaagtaccagggtactcgagctcctagttctgctcgaccagcactgg
aactactctcgactgaagtatccgatctgcctgctctcgcgaacaggccgggagatgtta
acattcgtccggagtatgatggagtggcttggcggcactatcagcaaagaggacgtcggt
gaagacggcaccaaccacggcagggaccgacggagacgagacgaggacaacgacgaagag
gctctaggcgcatttgctctacgcttccgacacttggagttcttttctagtcctcaggca
ctgatgagcacatactccaccaaagatcccaagctgatactagcagtcccagccactctc
tcgcacggtccatctcgtagcctctttgctcacttcgctgagatacccgacaacgtcgtg
ctgttgactggaaggagcgagccaggaacgctcgggagaatcctcttcgacaagtggaat
aactcccagcgtgaggaagcgaagtgggaccgcggcaagatcgggaacaacatcatgatg
gacggcgtactgcgtctcgagattcacaagaaagtgcctctccaaggcgacgagctcgag
gagttccttgcgaaagaacgcgcggttaaggagaaagaggcagctcatcaggctgcgctc
gcacgcacgcaacgcatgctagaagcagacgagggccagagtgactcggatagcgacgat
gaggatgaatccgatgacgacgaagaggatgaggtggagcgcgagctgggcgaggatctc
atggacgcgacggacgacctcaagcgctcccgccaaggtcctaacgcaacaactcggtct
ggaaccaagcgcaaaagaggcgagggcggcgggggagacgggaccgactgggtgctcggc
aacgaagcggacgagggcgcgacgcgaatatcgttcgacatctacctgaagggcaacgtc
gcgaaggcgacttcgttcttcaagagcgccgacggccagacgcagcgcttccgtatgttc
ccatacgtggagaagaagcggaaggtggatgagtatggcgagacggtggatgtcggtacg
tggctgcggaagggcaaggtgctcgaagaggacgcggaggacgaagaaacgaaggatgcg
cggcggcggaaggaggaggaagaggctaagaaagcaccacaggaaccaccttcaaagttc
gtgacgtcgattgcggaggtgcagctcgcctgtcgcttgttcttcgtcgacctggagggt
ctcaacgatggacgtgccgtgaaaacgatcgtcccccaagtcaatcctcggaagatgatt
ctcattcatgcaccccaagctgcaacagatgctctcattgagagctgtgcaaacattcgg
gctatgacgaaggagatatatgccccagctcaaggcgaaaccgtccagattggccagcag
accaacagcttctcgatatcgctcagcgacgaactgctagcttcgatcaagatgtctagg
ttcgaggacaacgaggtgggctacgtggcaggtcggatcgctagccttgcgacgtccatg
attccggtgctccaaccggcatcatcggcctccttgcagacacaagccgccagcttgcaa
cccgtgcaagttcgcatgctagggtcacgaccgaagcagcctctaccacagtctacaatg
attggcgaactcaagctcacctcactgaaggctcgcctcgctcaggtcggggtacaggcc
gagcttgtcggtgagggtgtcctcatctgtggcgcagcagcgaagaaaggcgcgagtgca
gacgctctggaggactcggtcgcggtcaggaagaccgggcgtggacgtgtcgagctcgag
ggctccatctcggacatctactacaaggtccgcaaggagatctatgccctgcacgcgctc
gtcgcggcttga
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integrated database retrieval system
