Trametes versicolor: TRAVEDRAFT_172917
Help
Entry
TRAVEDRAFT_172917 CDS
T04795
Name
(RefSeq) RNA-binding domain-containing protein
KO
K12881
THO complex subunit 4
Organism
tvs
Trametes versicolor
Pathway
tvs03013
Nucleocytoplasmic transport
tvs03015
mRNA surveillance pathway
tvs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRAVEDRAFT_172917
09122 Translation
03013 Nucleocytoplasmic transport
TRAVEDRAFT_172917
03015 mRNA surveillance pathway
TRAVEDRAFT_172917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_172917
03041 Spliceosome [BR:
tvs03041
]
TRAVEDRAFT_172917
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TRAVEDRAFT_172917
TREX complex
TRAVEDRAFT_172917
Spliceosome [BR:
tvs03041
]
Complex C
Other components
EJC/TREX
TRAVEDRAFT_172917
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TRAVEDRAFT_172917
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
SEF14_adhesin
Motif
Other DBs
NCBI-GeneID:
19411352
NCBI-ProteinID:
XP_008042412
JGI:
172917
LinkDB
All DBs
Position
Unknown
AA seq
251 aa
AA seq
DB search
MLSHAQSSRLNTYHTPKQRILGNPSAHPAPAWRPNARAANTDPGSKILLSRLPLDVEENE
VETLFTRTVGPVKEVLMVYNSQGNSRGMAVVTFARAADASVARGKYNGKIVDGRRPIRIE
IVIDDEEVHRIPPPPATGAPSLLERLGPPKVFQAAAQPHPRQHIALGKGAPQQPQQQQPP
PPTGPHNVKGKLRAKKGPRRLNKQRQAQPAKQPPKKKTAEELDKEMEDYKARAAGNKIKT
SESATFMMQLV
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atgttatcgcacgcgcagtcctctcgcctgaacacctaccatacaccgaagcagaggatc
cttgggaacccgtcagcacatcccgcgcccgcatggaggccgaacgcgagggctgccaac
acggaccccgggagcaagattctgctgagccggctccctctggatgtcgaggagaacgaa
gtagagaccttgttcactaggacagtgggaccggtgaaggaggttctcatggtgtacaac
tcccagggcaactcgcgcggcatggcggtcgtgacatttgcgcgcgcagccgacgcgtct
gtggcgcgcgggaagtacaatgggaagattgttgacggcagaaggccaatccgaattgag
atcgtaatcgacgatgaggaggtgcacagaatcccgccacctcccgccactggcgcgccg
tccctcctcgagcgtctcggcccccccaaggtcttccaggctgcagcacaaccacatccg
cgccagcatatagccctaggaaagggtgcgccacagcagccgcaacaacagcagccgcca
ccgccaaccgggccacacaacgtgaagggaaagctgcgcgcgaagaaagggccacgaagg
ctgaacaagcagcgacaagcgcagcccgcaaagcagcctccaaagaagaagactgcagag
gagcttgacaaggagatggaggactacaaggcccgcgcggcgggcaacaagatcaagact
tccgagtcggccactttcatgatgcaacttgtgtag
DBGET
integrated database retrieval system
