Trametes versicolor: TRAVEDRAFT_172942
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Entry
TRAVEDRAFT_172942 CDS
T04795
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
tvs
Trametes versicolor
Pathway
tvs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
TRAVEDRAFT_172942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvs03400
]
TRAVEDRAFT_172942
DNA repair and recombination proteins [BR:
tvs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
TRAVEDRAFT_172942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
19411355
NCBI-ProteinID:
XP_008042420
JGI:
172942
LinkDB
All DBs
Position
Unknown
AA seq
1247 aa
AA seq
DB search
MKQKSLMSFFGKTPTKDEKTAATPNLKATSAKEKAPDADASSPVVTEARTPLPKGSSQSS
GIVSATYTRSSEGSARDTPPTSDPIDVDMIEDEDEDESGAVQSSAARPTASRTKRKIVVD
DDDDDLASSEPLAYKRASGRSKKARMSAVFSDEEEEEEEDAPRLNSFAKRLTKYQKSPAK
GKSRRRKTDDDDDFIVPDDINEEDEDEDNDRASSRASSSSRPSSRLSAYSRSSGATDAES
DEEAPKTKKKAAARPPLQKESSSMGGSNFLTAAEQRALKQKDEKKSTEDPFSFLVDVRDK
DEVRPGQPGYDPRTLYIPPRAWTSFTPFEKQFWEIKQNHFDTILFFQKGKFLELYEEDAR
VGHREFDLKLTQRVKMSMVGVPEMSFNFWAAKFLAKGYKVGRVDQAETALGAEMRLAADK
KNKKEPAKDKGKDKIVRRELNKVYTNGTLVDEELLTDEQAGHCVSIREEEAVETDKDGKQ
TFGICVLDSATSEFNLSAFEDDICRTKLETMMRQLRPKEIIFTKGNLSVSTTRLLKSILP
GNCLWTSLRESEGFKYNEAIKELKKLYPADEDDDEMADNPHGLTKAVPEPIRRMLPHQGA
IQALGSMIWYLHTLNIDKDILSMKNFNVYDPMKRGQGLVLDGQTLAHVEVLQNNEGTEEG
TLLKLLGRCITPSGKRLFRIWLCMPLREVKDINARLDAVQDLLEHPTFEKDFTAIAKGLP
DLERIVSRIHAKNCKVKDFIKVLGAFRSLSKGLSALAETADSFDSKSIPGLLRTAPDLTP
NLKHIQAMFKPPESGSDELCPEDGKDEVYDGIMEEINELENELKSELKKLRKQTGLDLTY
WHSAQGTKEIYLVQTQGKERDKAPKGWTLSGSTKAAKRFIVPALQTTIRKVKEARENRNT
AIKEFKNRLYAEFDLDRSVWLRAIRVLAELDCLFSLAKASSALGEPACRPELVEGDEAFI
EFEDLRHPALCASGSLKGDFIPNNVKLGGEVGKIALLTGTGKSTAMRMTAAGIIMAQLGM
LVPAAKARLCPVDSILTRMGAYDNMFSNASTFKVELDECCKILRDATPKSFVILDELGRG
TSTYDGMAIAAAVLHELATHTLSLSFFATHYGSLTDDFAYHPNIRNMHMQTLVDDEKREL
VFLYKLVEGVASSSFGTHVANLAGVPLAVVERAEVVSRDFAKHFQEKVEGKKNKAAGRLP
IVAQADFAYLYKLATGALEMPADRVRRREVLRMLKGAVKGCLQECAA
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagaagagcctcatgtctttctttggcaaaacgccgaccaaggacgagaaaacc
gctgcgacgccaaacttgaaggcgacttctgcaaaggagaaagcaccagatgcagacgcg
tcttcccccgttgtgacggaggcgcggacgccgctgccaaagggaagctcgcagtcgtcg
ggcatcgtgagcgcgacgtatacgcgcagctcggagggcagcgcgcgggataccccgccc
acgagcgaccctatagacgtcgacatgatcgaggacgaggacgaggacgagtcgggcgcg
gtgcagagcagcgcggcgaggccgacggcttcccggacgaagcggaagatagtcgtggac
gacgacgacgatgaccttgcttcaagcgaaccgctcgcatacaagcgggcttcgggcagg
tcgaagaaggcacgcatgtctgctgtattctccgacgaagaggaggaggaagaggaggat
gcgccaaggctcaattccttcgcgaaacgtctcacgaagtaccagaagtctcccgccaag
ggcaaatctaggagacggaagaccgacgatgacgacgacttcattgtcccagacgacatc
aacgaggaggacgaggacgaggacaacgaccgggcgtcttcgcgtgcttcgtcgtcgtca
cgcccctcgtcgcgtctatcggcgtattcccgttcctccggggcgaccgacgcggagtcg
gatgaagaggcacccaagacgaagaagaaagccgctgcgcgcccgcctttgcaaaaggag
agtagctccatgggtgggagcaacttcctcaccgcggcggagcagcgcgcgctgaagcag
aaggacgagaaaaagagcacggaggatccgttcagcttcctggtcgacgtacgcgacaag
gacgaagtgcgcccgggccagcccggatacgacccgcggaccctgtacatcccaccgagg
gcgtggacgagcttcacgcctttcgagaagcagttctgggagatcaagcagaaccacttc
gacacgatcctgttctttcagaagggcaagttcctagagctgtatgaggaggacgcgcgc
gttggccatcgcgagtttgaccttaaactgacacagcgcgtcaagatgagcatggtcggc
gttcctgagatgtccttcaacttctgggcagccaagtttctcgctaaaggctacaaagtt
ggacgtgttgaccaggcggagacagccctcggggcagagatgcgtcttgctgccgacaag
aagaacaagaaggaaccggccaaggacaagggaaaggacaagatcgtgcggcgcgagctc
aacaaggtctacaccaatggcacgctcgtcgacgaggagctgctcacagacgagcaagcg
ggccactgcgtctccatccgcgaagaggaggcggtggagaccgacaaggacggcaagcag
actttcgggatttgtgtgctcgatagcgccacgagcgagttcaacctcagcgcgttcgag
gacgatatttgtcgtacgaagctggagacgatgatgcgccagctgcgcccgaaggagatc
atttttactaagggaaatctgtcggtctcgactacgcggctgttgaagtcaatcctgccc
gggaactgcttgtggacgagtctgcgcgagagcgagggattcaagtacaacgaggcgatc
aaggagctgaagaagctctatcctgcggatgaggacgacgacgagatggctgacaacccg
cacggcttgaccaaggctgtacccgagcccatccgaaggatgctcccgcaccaaggagct
atccaggcgctggggtcgatgatctggtacctgcatacactcaacatcgacaaggacatc
ttgagcatgaagaacttcaatgtatacgatcccatgaagcgtggacagggcctagtcctg
gatggtcagactctcgcccatgttgaagtcctacaaaacaacgaggggactgaggagggc
accctgctcaagttgcttgggcgatgcatcactccctcaggcaaacgtctgttccgtata
tggttgtgtatgcctcttcgcgaggtaaaggacatcaatgcgaggcttgacgcggtgcaa
gacctgctcgaacaccccacgttcgagaaggacttcacggcaatcgcaaagggccttccg
gatttggagcgcatcgtctcccgtatccacgcgaagaactgcaaggtcaaggacttcatc
aaggtcctcggcgcgttcaggagcctcagcaagggcctatctgctttggccgagactgcg
gactccttcgactctaagagcatccccggactgctgcgcacggcgccggacctcaccccg
aacctgaagcacattcaggcgatgttcaagcccccggagagtgggagcgacgagctttgt
ccggaagacggcaaggatgaggtgtatgacggcatcatggaggagatcaacgagctagag
aatgagctcaagagcgaattgaagaagctccgcaagcagactgggttggacctcacttac
tggcacagcgcccaaggcaccaaggaaatatacctcgtccagactcaaggcaaggagagg
gataaggcacctaagggatggacactgagcgggtctacgaaggccgcgaagcgcttcatc
gtccccgccttgcagaccacgatccggaaggtcaaggaagcccgggaaaaccgcaacacc
gccatcaaggagttcaagaaccggctgtatgccgagttcgacttggaccgcagcgtatgg
ctgcgcgccatccgggtgctcgccgagctagactgtctgttcagcttagccaaggcatcg
agtgcgcttggggagcctgcgtgcagacctgagctcgtggagggcgacgaggcgttcatc
gagtttgaggacttaaggcacccggcgttgtgtgcgagtgggtcgttgaagggcgacttt
atcccgaacaatgtgaagctgggtggcgaggtcggtaagatcgcgttgttgactggtaca
ggtaaatcaacagccatgcgtatgactgctgcaggcattatcatggcgcaacttggtatg
cttgtaccagccgcgaaagctcgtctctgcccggtggactctatccttacccgcatgggt
gcctacgacaacatgttctcgaacgccagtacgttcaaggttgagctcgacgaatgctgt
aagatcctgcgcgacgcaacaccgaagtcgttcgtgattctcgatgaattgggccgcggg
acctctacatacgacggtatggccatcgcggctgcggtgctccacgaactggcgacgcac
acgctgtcgctgtcatttttcgcaacccactacgggtcgctgacggacgacttcgcgtac
caccccaacattcgcaacatgcacatgcaaacgctcgtcgacgacgaaaagcgcgagctc
gttttcctttacaagctcgtcgagggcgtcgcgagctcctccttcggcacgcacgtcgcg
aacctcgccggggtgcccctcgcggtcgtcgagcgcgcagaggtcgtctccagggacttt
gcgaagcacttccaggagaaggtcgagggcaagaagaacaaggcggccggccgcctgcct
atcgtcgcgcaggcggactttgcgtacctgtacaagctcgcgacgggcgcgctcgagatg
ccggcggacagggtccgaaggcgggaggtgctcaggatgctcaagggcgcggtgaaaggc
tgtctgcaggagtgcgccgcttga
DBGET
integrated database retrieval system
