Trametes versicolor: TRAVEDRAFT_27724
Help
Entry
TRAVEDRAFT_27724 CDS
T04795
Name
(RefSeq) exosome complex exonuclease rrp4
KO
K03679
exosome complex component RRP4
Organism
tvs
Trametes versicolor
Pathway
tvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRAVEDRAFT_27724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_27724
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TRAVEDRAFT_27724
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TRAVEDRAFT_27724
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
19412882
NCBI-ProteinID:
XP_008036049
JGI:
27724
LinkDB
All DBs
Position
Unknown
AA seq
288 aa
AA seq
DB search
MDLDEDDFEENVQRLTVPGEPITSSHAFMRGHGTFVDSEEVIASVAGTVERVNKLITVRS
VRSRYNPEVGDLVVGRITEVQPRRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQM
RTFFEEGDLLVAEVQAFFADGAMSLHTRSLRYGKLRNGQLVAVPPILIRRLKSHFVTLPC
GVDLILGLNGYIWVSKHVKASEQEGEEGFDAEAVYSNRNDTIDDATRVAISRVSNIIRVL
TAHFVPLSDTILLEAYEWVVEQESDVRDVLSDELGENLVASLGVGIRQ
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggacctcgatgaagacgactttgaggagaacgtgcagaggcttacggtgcctggagag
cccattacatcctcccatgcgttcatgcgagggcacggaacgtttgtagacagcgaggag
gtcattgcatcggtagctgggactgttgaacgcgtgaacaaactcatcactgtccgttca
gtgcggagcagatacaacccggaggttggtgacctcgtcgtaggtcgcattactgaagtg
caaccgcggcgatggaaagtcgacgcgaactcacggcaagacgccgtccttatgctctcg
tcagttaaccttcccggtggcgtgcagcgccgtaaactcgaaagcgacgagctgcaaatg
cgcacgttcttcgaagagggcgacctgctcgtggctgaggtgcaagcgttcttcgcggac
ggcgcgatgtctctccacacgcgttccttgagatacgggaagctgcgaaatgggcaactt
gtggccgttccccccattctcatccggcgactgaagtcgcattttgtcacgctgccctgc
ggcgtggacctcatcctcgggttgaatgggtacatctgggtcagcaagcacgtaaaagca
agcgagcaggaaggcgaggagggcttcgacgccgaggctgtgtactcaaataggaacgac
acaattgacgacgcgacccgcgtcgctatctcccgcgtgagcaacatcatcagggttctc
acggcgcacttcgtcccgctgtcggacaccatactgctagaagcgtatgagtgggtggtc
gagcaggagagcgatgtccgcgacgtattgagtgacgagttgggagaaaaccttgtcgcg
agtctcggcgtaggcatacgacaatga
DBGET
integrated database retrieval system
