Trametes versicolor: TRAVEDRAFT_40462
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Entry
TRAVEDRAFT_40462 CDS
T04795
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tvs
Trametes versicolor
Pathway
tvs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRAVEDRAFT_40462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvs03041
]
TRAVEDRAFT_40462
03009 Ribosome biogenesis [BR:
tvs03009
]
TRAVEDRAFT_40462
Enzymes [BR:
tvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRAVEDRAFT_40462
Spliceosome [BR:
tvs03041
]
Complex A
U2 snRNP components
U2 related factors
TRAVEDRAFT_40462
Complex B
TRAVEDRAFT_40462
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
TRAVEDRAFT_40462
Ribosome biogenesis [BR:
tvs03009
]
Eukaryotic type
90S particles
Helicases
TRAVEDRAFT_40462
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
SRP54
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
Med6
MutS_I
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
19414302
NCBI-ProteinID:
XP_008044084
JGI:
40462
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MASYNPYTNRPPISGTIAPKLGSKDPLFGFFPRRVTSQQVLKAMECDINPFSKKPHSAQY
KKILQDRKKLIVFQHMGHFLKMFSQNQIIVMVGETGSGKTTQIPQFVCYSDLPHLKGKLV
ACTQPRRVAAMSVAKRVADEMDVKLGKQVGYSIRFEDMTEPGTTFLKYMTDGMLLREAMN
DNELSRYSTIILDEAHERTLATDILMGLLKDIAKRRSDLKIVVMSATLDYQKFQNYFSLT
GAENPAPLFKVPGRTHLVEVFYTQGPEPDYVEATIRTVLMIHRAEDPGDILLFLTGEEEI
EDACRKIKLEANDLLNQDPDSVGPLVCIPLYSSLPPQQQQRIFDPAPSPRVPGGPAGRKV
VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESQLVSPISKASAQQRAGRAGRTR
PGKCFRLYTEKDFMTELEEQTHPEILRSNLANTVLELAKLGVDDLVHFDYIDAPAPETLL
RALELLNFLAAIDDEGKLTHLGSIMAEFPLDPQLGKMLIASPKFNCSNDVLTIVAMLSVP
NAWLRPPKQRKKADVAKALLTVPDGDHLTMMNVYNYYVNNKHDKNWCWNNYLSARALQQA
ENVRTQLLRTMERYEIELVTTKDERKLWTNIRKALVCGFFMQVAHKEGEKSQYLTVKDNQ
VVSLHPSCGLDTSPEWVLFNEFVLTTKPYIRTVTEVKPEWLLEYAQSYYDPATFPDGETK
RALLRKRRAAGEDGTASAKASRPGTLATGDRSKKRSRKA
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggctagttataacccgtacaccaacagacctccaatctcaggtacgatagcgcccaag
cttggcagcaaggacccactctttggctttttccctcgcagggtcacctctcagcaggtg
ctgaaggctatggaatgcgacatcaaccccttcagcaagaagccacactctgcgcagtac
aagaagatcctccaagaccgcaaaaagctgatcgtgttccagcacatgggccacttcctc
aaaatgttcagccaaaaccaaatcatcgtcatggtcggcgagacgggctcaggcaagact
actcagataccgcaatttgtttgttattctgacctgccgcacctcaaaggcaagttggtg
gcatgtacccagcctaggcgagtggctgccatgtctgtcgcaaaacgtgttgcggacgag
atggatgtgaagctcgggaagcaagtcgggtactctatccgtttcgaggacatgacagaa
cccgggaccaccttcttgaagtacatgaccgacggtatgctgctccgggaagccatgaac
gacaacgaactcagccgttactccacgatcatcctcgacgaggcccacgaacgtacactc
gccaccgatattctcatgggtctactaaaggacattgcgaagcggcgctccgacctcaag
attgtcgtcatgtccgcaacgctcgactatcagaaattccagaactatttcagcttaact
ggggccgagaatcccgcgccgctgttcaaggtaccaggtcggacgcatctagtagaggtg
ttctacacgcaggggccagagccggactacgtcgaggccacgattcggacggttctcatg
atccaccgcgcagaggacccgggcgatatcctacttttcctcaccggtgaagaggagatc
gaagacgcatgcagaaaaatcaagctcgaggcgaacgaccttctcaaccaggatccggac
agtgtcggccccctcgtgtgcataccgctctactcatctctccctccacaacagcagcag
cgtatctttgaccctgccccttctccccgcgttcccggcggcccggctggacgcaaggtc
gtcatctcgacaaatatcgctgagacgtccctcaccatcgatggcatcgtctacgtcgtc
gatcccggcttctcgaaacagaaggtgtacaacccgcgtatccgtgtcgagtctcagctt
gtttcgcccatctccaaggcgtccgcacagcagcgcgcgggtcgcgccgggcgtacgcgc
cccgggaaatgcttccggctatacacggagaaggacttcatgacggagctggaggagcag
acgcaccccgagatcctgcggagcaacctcgcgaacacagttctggagcttgcgaagctg
ggcgtcgacgatctggtgcacttcgactacatcgatgcgcccgccccggagacgctcttg
cgcgcgttggaactgctaaacttcctcgccgcgatagacgacgaggggaagctgacgcac
ttgggctcgatcatggcggaattcccgctcgacccgcagctggggaagatgctgattgcg
agcccgaaattcaactgcagtaatgatgtcttgacaatcgtcgcaatgctatctgtgcca
aacgcatggctgaggccgccaaaacagcgaaagaaggcggacgtagcgaaggcgctgctc
accgtccccgacggcgaccatctcacgatgatgaacgtgtacaactactatgtcaacaac
aagcacgacaagaactggtgctggaacaactacctctccgcgcgcgcgctgcagcaggcc
gagaacgtgcgcacgcagctgctgcgcacgatggagcggtacgagatcgagctcgtgaca
acgaaggacgagcgcaagctgtggacgaacatccgcaaggcgctcgtctgcggcttcttc
atgcaggtcgcgcacaaggagggcgagaagagccagtacctgacggtgaaggacaaccag
gtcgtgtcgctgcacccgagctgcgggctcgacacgagcccggagtgggtgctgttcaac
gagttcgtgctcacgacgaagccgtacatccgcactgtcacggaggtcaagccggagtgg
ttgctggagtatgcgcagagctattacgacccggcgacgttccccgacggcgagacgaag
cgggcgctgttgcgcaagaggcgcgcagccggagaggatggcaccgcgagcgcgaaggcg
agcagaccgggcacccttgctacaggtgaccgaagcaagaagaggtcgcggaaggcctga
DBGET
integrated database retrieval system
