Trametes versicolor: TRAVEDRAFT_55967
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Entry
TRAVEDRAFT_55967 CDS
T04795
Name
(RefSeq) TFIIH basal transcription factor complex subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tvs
Trametes versicolor
Pathway
tvs03022
Basal transcription factors
tvs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TRAVEDRAFT_55967
09124 Replication and repair
03420 Nucleotide excision repair
TRAVEDRAFT_55967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvs03021
]
TRAVEDRAFT_55967
03400 DNA repair and recombination proteins [BR:
tvs03400
]
TRAVEDRAFT_55967
Transcription machinery [BR:
tvs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TRAVEDRAFT_55967
DNA repair and recombination proteins [BR:
tvs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TRAVEDRAFT_55967
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
19417702
NCBI-ProteinID:
XP_008033954
JGI:
55967
LinkDB
All DBs
Position
Unknown
AA seq
452 aa
AA seq
DB search
MPPAGRRIGDDFVDDSDSDIDVDLFDDEPGRSKGKGKGKAAEKRKQDKGKSKAKEQGYAW
EATYVRSWDTVQEDEAGSIRGSVQDLIARGRRRRLLAPAAAIRRTIIRQLVLVLDLSAAM
LDRDMRPTRFDLMLQYAREFVTEWFDQNPLGQIGIAGMRGGLGERIGEMSGNPQDVLKAI
SERHRLEPNGEPSLQNAIEMARSSMSHLPTHSSREILVIFGSLTTCDPGNIHDTMDECVK
DRIRISIVALAAEMKICRDLCDKTGGQFSVVMNEGHFKDLLFELIPPPAQRAVARTGSGV
TANPAADLMIMGFPMRLPDTSPPSLCVCHSQMKSEGFLCPRCLAKVCDVPTDCDICGLMI
VSSPHLARSYHHLFPVKAYQAVNTLEDTLNPSKQCHGCSVAFRGTPSVVAGASGEGMSPF
GRYRCPECHNDFCTDCDVFVHDVVHCCPGCGQ
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgccagcaggaaggcgcataggagatgatttcgtggacgactcagactcggacatt
gatgtcgacttgttcgatgacgaaccgggcagatcgaaaggaaaaggaaagggcaaagcc
gcggagaagcggaagcaggacaagggcaaaagcaaggccaaagagcaaggatacgcttgg
gaggcaacttacgtccgctcttgggacactgtacaagaagatgaagccggaagcatacgg
ggttccgtgcaagatctcatagcgcggggtcgacggagaaggttacttgcaccggctgca
gctatccgacgaacaattattcgtcaactcgtgctcgtcctagatctatccgccgccatg
ttggaccgtgacatgcggcctactcgctttgatctaatgctgcagtacgcaagagagttt
gtcacggagtggttcgaccaaaatcctctcggtcagattggaatagcgggaatgaggggg
ggcctcggcgagagaataggcgagatgtccgggaatcctcaagacgtcctcaaagctatc
tcagaacggcataggcttgaacctaatggagaaccaagcctgcaaaatgcgatagaaatg
gcgcggagcagcatgagtcatttgccaacacattcatcgcgcgagatcctagtcatcttt
gggtcactcacgacctgcgatcctggaaacattcacgacacaatggatgaatgtgtcaaa
gaccgaatacgcatttcgatagtggcactcgctgcggaaatgaagatttgtcgcgaccta
tgtgataaaacaggaggacagttcagtgtcgtgatgaatgaaggtcacttcaaggatctg
cttttcgaactcatccctcctccggcgcaacgcgccgttgcgcgaactggtagcggggtt
accgcgaaccccgcggcagacctcatgatcatgggatttccgatgcgtcttccagatacc
tctcctccgtcattgtgcgtatgccactcgcaaatgaagagcgagggcttcctgtgccca
cgctgcctcgcgaaagtatgcgacgtcccgaccgactgcgacatctgcggtctgatgatc
gtcagctccccacatctggcacggagctatcaccacctctttcctgtcaaagcctaccaa
gcagtgaacacactggaagatacgctgaatcccagcaaacagtgccacgggtgctcggta
gcgttcagggggacgccctctgtcgtggcgggtgcttctggggagggtatgagcccgttc
gggcggtatcgatgtcccgagtgccacaacgacttttgcacagattgtgatgtgttcgtg
cacgatgttgtccactgctgccctggttgcggccaatga
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