Trametes versicolor: TRAVEDRAFT_60006
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Entry
TRAVEDRAFT_60006 CDS
T04795
Name
(RefSeq) antiviral helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tvs
Trametes versicolor
Pathway
tvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRAVEDRAFT_60006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_60006
03041 Spliceosome [BR:
tvs03041
]
TRAVEDRAFT_60006
03009 Ribosome biogenesis [BR:
tvs03009
]
TRAVEDRAFT_60006
03016 Transfer RNA biogenesis [BR:
tvs03016
]
TRAVEDRAFT_60006
Enzymes [BR:
tvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRAVEDRAFT_60006
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
TRAVEDRAFT_60006
Spliceosome [BR:
tvs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TRAVEDRAFT_60006
Complex C
U4/U6.U5 tri-SnRNP related factors
TRAVEDRAFT_60006
Ribosome biogenesis [BR:
tvs03009
]
Eukaryotic type
Pre-60S particles
Helicases
TRAVEDRAFT_60006
Transfer RNA biogenesis [BR:
tvs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
TRAVEDRAFT_60006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
19418131
NCBI-ProteinID:
XP_008041464
JGI:
60006
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MDSSDLFSFLDDSAQQKQPSQDANGDVHMETESQAKSTARKRKAITPPQRKESDPIAEGS
SNAAASPKSVVVDEVEIEAKREVAASAGLTGAVDAGSRLELRHQVRHQVAVPPGYPYVPI
ANHVPPEKPAREYKFVLDPFQQVSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCLLQKQ
RVIYTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPSATCLVMTTEILRSMLYRGSEIM
REVAWVIFDEVHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNAMQFAEWICKSHEQP
CHIVYTDFRPTPLQHYLFPAGGEGIYLVVNEKGEFREDNFTKAMGMLQDTMGDDPADPKA
GKGRKGKTKKGTEKKGSSDIQKIIKMIMLKNYNPVIVFAFSKRECEALALTLSKLEFNST
DEQDLVANIFNNAIENLAPDDRQLPQIANLLPLLKRGIGIHHGGLLPILKEVIEILFQEG
LIKVLFATETFSIGLNMPAKTVVFTAARKFDGRDFRNLSSGEYIQMSGRAGRRGLDDRGV
VIMMCDEKLEPVAAKEMIKGEADRLDSAFHLGYNMVLNLMKVEGISPEFMLERCFYQFQS
NAEVPVIEGELRKEEELKDAIVVPDEELVASYYDFRQQLDQMAADFREVITHPNYSLPFL
QPGRLVKVKHQKLDFGWGVIVNYQKRLPPKNRPGPKPEDVPAHEQYIVDVLLYCTKGSTL
PKDRNVTTPTPGGIQPCLAGRGGEPLVVPVTLSTIDSISRLRIFMPKDLRPLQQRETTWK
AVLEVQSRFPTGIPLLDPIADMKITDAKFKELVQKIDTMEKKMFSSTLHSDPRLPELYTL
YARKQEHQARIRELRKRVQATEDVLQMEELKCRKRVLRRLGFTNASDIVDMKGRVACEIS
TGDELLLTELIFNGVFNTLTPEQCAGLLSCFVFTEKSEQVTKLKEELAAPLRVMQEIARR
IAKVSKESKLPVNEDEYVQSFKVELMDAVVQWCRGASFSDICKLTDQFEGSLIRVFRRLQ
ELIRQMAQAAKVIGNNELQEKFEKASEMLERPNSVIFCSSLYL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggactccagcgaccttttctcgttcctggacgacagtgcgcaacagaaacagccatca
caagacgctaatggcgacgttcatatggaaaccgagtcccaggcgaagagcacggcgagg
aaacgcaaggctatcacccctccgcaacggaaggaaagcgaccccatagcagaaggttcc
agcaacgccgcagcctccccaaaatcggttgttgtcgacgaagtcgagattgaggccaaa
cgggaggttgcggctagtgctggattgacaggtgccgtcgatgcaggatcccgtctggag
cttcggcatcaggtacgacaccaagttgccgttcccccagggtacccctacgtacctatc
gccaaccatgtgcccccagaaaaaccggcccgcgaatacaagttcgttctcgacccgttc
cagcaagtgtcggtgtacgctatccagcgaaatgagagcgtgctcgtctccgcacatacg
agtgcaggaaagacggtagtagcagagtatgccattgcgcagtgcctgctacagaagcag
cgagtaatctacacaagtccgatcaaggctctgagcaatcagaagtaccgtgagatgctt
gccgagttcggggacgtgggcttgatgaccggagacgtcacaatcaacccgagcgcaaca
tgtctggtcatgacgactgagattttgcggtcaatgctttaccgcggttccgagatcatg
cgcgaagtcgcgtgggtcatcttcgatgaggtccactacatgcgcgacaaggaacgaggt
gtcgtttgggaagagaccataatcctgctaccacacagcgtgcgctatgtcttcctgtcc
gccaccatccccaacgcgatgcagtttgcagagtggatatgcaagtcccatgaacaaccc
tgccacatcgtctacaccgacttccggcccacgccactacaacattatctcttcccagct
gggggtgaaggtatctacctcgttgtcaacgagaagggcgagttccgggaagacaacttc
acgaaggcgatgggcatgctgcaagatacgatgggcgacgaccccgcggatccgaaagca
ggcaagggaaggaagggcaagacaaagaagggcaccgagaagaagggctcgtcggacatc
cagaaaatcatcaagatgatcatgctgaagaactacaaccccgttatcgttttcgcgttc
agcaaacgcgagtgcgaagcgctcgcgcttacgctgtctaagctagagttcaactcaacg
gatgaacaggacctcgtcgcgaacatcttcaacaacgcgattgagaaccttgccccggac
gaccggcagctaccccaaatcgcgaacctcctcccgctcctcaagcgcggcatcggcatc
catcacggcgggttgctcccgattctcaaggaggtcatcgagatccttttccaggagggg
ctcatcaaggtcctgttcgcgaccgagactttctcgatcgggctgaacatgcccgcgaag
acggttgtgttcaccgcggcgcgcaaattcgacggccgcgacttccgcaacctctcgtcc
ggcgagtacatccagatgtccggccgtgcgggccgtcgcgggctcgacgaccgcggtgtc
gtgatcatgatgtgcgacgagaagctagagcctgtggcggcgaaggagatgatcaagggc
gaggcggaccggctcgactccgcgttccatctcgggtacaacatggtgctcaacttgatg
aaggtcgagggcatcagtccggagttcatgctcgagcggtgtttctaccagttccagagc
aacgccgaggttcccgtcatcgagggcgagctccggaaggaggaggagctgaaagacgcg
attgttgtaccggacgaggagcttgtcgcgagctattacgacttccggcagcagctcgac
cagatggctgcggacttcagagaggtcatcacgcaccctaactacagcttgcccttcctc
cagcccggacgtctcgtcaaggtcaagcatcaaaagctcgactttggctggggcgtcatc
gtcaactaccaaaagcggttaccgcccaagaaccgccccgggccgaaacctgaggacgtg
cccgcccatgaacaatacatcgtcgatgtgctgctctactgtacaaaaggctcgacactg
cccaaggaccgtaacgttaccacacccacccctggcggcatccagccatgtttggcagga
cgtggtggcgagccgctcgtcgttcccgtcacgctctccacgattgactccatcagtcgg
ttgcgtatattcatgccgaaggatctccgaccgctccagcagcgagagactacatggaag
gccgtcttagaggtgcagagcaggttccccacgggtatcccactcctggaccctattgcc
gacatgaaaatcaccgatgcgaagttcaaggaacttgtccagaaaatcgatactatggag
aagaagatgttctcgagcacgcttcacagcgacccgcgcctaccagagctctacacactg
tacgcacggaaacaggaacaccaggcgcgcatccgcgagctgcggaaacgcgtgcaagcg
acggaagatgtgctgcagatggaggagctcaagtgccgcaagcgcgtcctccgccgccta
gggttcacgaacgcgtcggacatcgtcgacatgaaaggtcgcgtggcttgcgagatcagc
acgggcgacgagctactgctcacggagctcatcttcaacggtgtcttcaacacgctcact
ccggagcagtgcgcgggtctgctcagctgtttcgtcttcacagagaagagcgagcaggtg
acaaagctcaaggaggaactcgcggcaccgctgcgtgtcatgcaggaaatcgcgcgacgc
atcgcaaaggtctcgaaggagtccaagctacctgtcaacgaggacgagtacgtgcagtcc
ttcaaggtcgagcttatggacgctgtcgtccagtggtgccgaggggcatcgttctcggat
atctgcaagctcaccgaccagttcgaaggcagcctcatccgtgtgttccggcgcctgcag
gagctcatccgccagatggcgcaggccgcaaaggtcatcggcaacaacgagctgcaggag
aagttcgagaaggcgtcggaaatgctggagcggccaaactcggtcatcttctgctcgtca
ctgtacctgtag
DBGET
integrated database retrieval system
