KEGG   Trametes versicolor: TRAVEDRAFT_68627
Entry
TRAVEDRAFT_68627  CDS       T04795                                 
Name
(RefSeq) nuclear matrix protein NMP200
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
tvs  Trametes versicolor
Pathway
tvs03040  Spliceosome
tvs04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tvs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TRAVEDRAFT_68627
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    TRAVEDRAFT_68627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tvs03041]
    TRAVEDRAFT_68627
   04121 Ubiquitin system [BR:tvs04121]
    TRAVEDRAFT_68627
   03400 DNA repair and recombination proteins [BR:tvs03400]
    TRAVEDRAFT_68627
Enzymes [BR:tvs01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     TRAVEDRAFT_68627
Spliceosome [BR:tvs03041]
 Complex B
  Other components
   Prp19 complex
    TRAVEDRAFT_68627
 Complex C
   Prp19-CDC5 complex
    TRAVEDRAFT_68627
Ubiquitin system [BR:tvs04121]
 Ubiquitin ligases (E3)
  U-box type E3
   TRAVEDRAFT_68627
DNA repair and recombination proteins [BR:tvs03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    TRAVEDRAFT_68627
SSDB
Motif
Pfam: WD40_Prp19 Prp19 WD40_CDC20-Fz WD40 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 U-box Beta-prop_WDR19_1st Beta-prop_WDR75_1st zf-Nse WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_HPS5 PEP5_VPS11_N Beta-prop_SCAP zf-NOSIP Frtz
Other DBs
NCBI-GeneID: 19419017
NCBI-ProteinID: XP_008033186
JGI: 68627
LinkDB
Position
Unknown
AA seq 504 aa
MSFFCSISGEPPLDPVVSTKSGHVYERRLILKYINENGTDPITGEKLEESDLIGVKANPK
SAPPRPPNATSIPVLLQTLQNEWDAAMLETFALRQQYNSLRQELSYALYTQDAAQRVVAR
LLKERDAAREALSSVAATMNVEVPSQGDVDMGEAAQEAGGLPADTLKQIDETHQKLSALR
KKRKAPEGYATAADVKGYTGKHTIPSLHSPSPAGITALAVSTANPEQFLTGGNDKIVQLY
DRSTDKVLATLKGHTKKVTHVAFREREGDPTLVLSASADKIAKVWAHDSASGEYIPKATI
RTHKGELTGLVVHPTSSLLALGSTDRTWSLHDLTTFSQVFRSPEADEPLTSLSIHPDGTL
VAVGTPGGAIQVFDIRSGAVAASLQPEGAAPFTVNTLSFSENGYHLAAPDSLASVAVWDL
RKPKVAKSIALGDAFRVHRVKYDASAGFLGVAGSEGLRVFAHKTWEELVRFEEGGEVADF
AFAADGSEIWGATGREVRVWGAAV
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtctttcttctgctccatatctggagagcccccgctggaccctgttgtgtcaacaaag
tctggccatgtctacgagcggaggctcatcctcaagtacatcaacgagaatggcacggac
cccattaccggagagaagctcgaggagagcgacctcatcggtgtaaaagccaacccgaag
tccgcgcccccacggccgccaaatgccacctctattcccgttcttcttcagaccctgcaa
aacgagtgggacgcggcaatgctcgagacattcgcgctcaggcagcaatacaactcgctg
cgccaagaactgagctatgcgctctatacacaggacgcggcccaacgcgtcgtggcgcgt
ctcctcaaggagcgtgacgctgcccgggaagcgctcagtagtgttgcagccactatgaac
gtggaggtgccttcgcaaggtgatgttgacatgggagaggcggcgcaagaggctggtggt
ctgcccgcagacacgctcaagcaaatcgacgagacgcaccagaagctctctgcactgcgc
aagaagcgcaaggcccccgaaggctacgcgactgccgcggacgtcaagggctacactggc
aagcataccatcccctccctccactccccgtcccccgctggcattaccgctttggctgtc
tcaaccgcgaaccccgagcaattcctcaccggcgggaacgacaagattgtgcagctctat
gacaggagcacggacaaggttctcgccaccctcaagggccacacgaaaaaggtcacgcac
gttgccttccgcgaacgcgagggtgacccgacgctcgtcctctccgcgagtgcggacaag
attgcgaaggtctgggcacacgactccgcatctggcgagtacattccgaaggcaacgatc
cgcacccacaagggcgagctcaccggcctggtcgtccaccccacatcgtcgctcctcgcg
ctcggctcgactgaccgcacatggtccctccacgacctcacgacgttcagccaggtgttc
cgctcgcccgaggcggacgagccgctcacctcgctcagcatccaccccgacggcacgctc
gtcgcggtcggcacgcccggcggcgcgatccaggtgttcgacatccgctccggcgcggtc
gccgcgtcgctgcagcccgagggcgccgcgcccttcaccgtgaacacgctctcgttctcg
gagaacgggtaccatctcgccgcgccggactcgctcgcgtccgtcgcggtgtgggacctg
cgcaagccgaaggtcgcgaagtcgatcgcgctcggcgacgcgttccgcgtgcaccgcgtc
aagtacgacgcgagcgcgggcttcctcggcgtcgcgggcagcgagggcctgcgcgtgttc
gcgcacaagacgtgggaggagctcgtgcgcttcgaggagggcggcgaggtcgcggacttt
gcgttcgccgcggacgggtccgagatctggggcgcgacgggcagggaggtgcgcgtctgg
ggcgcggcggtgtga

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