Trametes versicolor: TRAVEDRAFT_75082
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Entry
TRAVEDRAFT_75082 CDS
T04795
Name
(RefSeq) ribosomal protein S5 domain 2-like protein
KO
K12589
exosome complex component RRP42
Organism
tvs
Trametes versicolor
Pathway
tvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRAVEDRAFT_75082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_75082
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TRAVEDRAFT_75082
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
TRAVEDRAFT_75082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
19420110
NCBI-ProteinID:
XP_008044341
JGI:
75082
LinkDB
All DBs
Position
Unknown
AA seq
342 aa
AA seq
DB search
MATQLVSKAERAYIQASLQATPPLRADGRGLLDFRTVLLETGVAPLANGSARLNIGKMAH
EGGGGTEVLAATKLEVEDMETGDGVDGGRVVCSVSCSPSAYSHLSSNALDELQHDLTVIL
QQTISHPSLHPQNLTIIPRKKSWLLNLDAVILADAGNAVDALFMAARAALWDTKVPRTRA
VEYNAPEASQVARDSAGAMDVDNREAIPAVSGFDTREMVRTAADFELPDYWDEGEVLQGQ
EKWPVCVTLNLLPPTHFLDATQPEEASAPLRVHLMFSFASATSPKLHSLRLSGPGELELT
QVKSYIADGEKYARELYNALETKLREEDVRRNVKARDRFALR
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacaactggtttcaaaggcggagcgtgcatacatccaagcttctctgcaggcc
acgcctccgttacgcgcagatggacgcggtcttctcgatttccggactgtcttgctagaa
actggcgtcgcgcccctagcaaacggcagcgcgaggctcaatatcggaaagatggcacac
gaaggcggaggcgggaccgaggtgctcgccgcaaccaagctggaggtagaggacatggag
actggggacggcgtcgacggcgggagggtagtatgctcggtttcgtgctctccttcggca
tattcgcatctgtcctcgaatgcgttggacgagctccaacacgacctcaccgtgatcctg
caacaaacgatcagccacccttctctgcaccctcaaaacctgaccatcatccctcgaaaa
aagtcatggctcctcaacctggacgcagtaattttggcggacgcgggaaatgcagttgac
gcgctgttcatggctgctcgcgccgcactatgggataccaaggtaccgcgcacgcgggcc
gtggagtacaatgctccagaagcgtctcaagtggcgagggacagtgctggcgcaatggac
gtcgataacagggaggccattccagcagtaagcggcttcgatacacgggagatggtcagg
acggctgccgacttcgagcttcctgattattgggacgaaggcgaggtgctgcagggtcaa
gaaaagtggcctgtatgcgtgaccttgaaccttctgccgccgacgcattttcttgacgca
acgcaaccagaagaagcatccgcgccattacgggttcacctgatgttctcatttgcttct
gcaacctcgcctaagttgcattctctgcgactatcaggacctggagaattggagttgacg
caagtgaagtcctatattgcggatggcgagaagtacgcgcgggaattgtacaacgcgcta
gaaaccaagctgcgcgaagaagacgtcaggcgtaatgtcaaggcaagagataggtttgcc
ctgcgatga
DBGET
integrated database retrieval system
