Terrisporobacter vanillatitrophus: TVTCOM_23150
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Entry
TVTCOM_23150 CDS
T11160
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tvt Terrisporobacter vanillatitrophus
Brite
KEGG Orthology (KO) [BR:
tvt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tvt03016
]
TVTCOM_23150 (rtcB)
Enzymes [BR:
tvt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TVTCOM_23150 (rtcB)
Transfer RNA biogenesis [BR:
tvt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TVTCOM_23150 (rtcB)
Prokaryotic type
tRNA splicing ligases
TVTCOM_23150 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Luciferase_N
Motif
Other DBs
NCBI-ProteinID:
XAM52202
LinkDB
All DBs
Position
complement(2304327..2305547)
Genome browser
AA seq
406 aa
AA seq
DB search
MIKVSGKYNSAKIFANNIDEKSREQIEELCDQEFVKNGKIRIMPDAHAGAGCVIGFTAKL
GDMVIPNIVGVDIGCGMFTVELGEIDFPLDKLDNIINQYVPSGKNVHEGKKYNFTKLQDL
YCYRELKQSKWIERSIGTLGGGNHFIEVDEDKNKNKYLVIHSGSRNLGKQVAEYYQSLAI
ELCSGKEKFYEEKEELINTFKEQGRRKEIQNELKKLIKKYADLKPKYPKDLCFLSGKYRE
EYLHDMKICPEYAEINREVMANIILNKLINKSVDDFSHFHTTHNYINFKDNIIRKGSISS
YEGEKLLIPINMRDGSILATGKGNEDWNFSAPHGAGRLMSRTEAKEKLNLNDFENTMKDI
WTTSVCEETIDEAPMAYKPIEDILKFVGDTVDIIDVIKPIYNFKSK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagtaagtggaaaatacaactcggctaaaatatttgctaataatattgatgaa
aaatcaagggagcaaatagaagagctttgtgaccaagaatttgtaaaaaatggaaaaata
agaataatgccagatgctcatgcaggtgcaggatgcgttattggatttactgctaagctt
ggtgatatggtcatacctaatatagtaggtgtggacattggatgtggaatgtttactgta
gaactaggggaaatagattttcctttagataagctagataatattattaatcaatatgta
ccttctggtaaaaatgttcacgaaggtaaaaaatataattttactaaattacaagatcta
tactgctatagagaattaaaacaaagcaaatggatagaaagaagtataggaactttaggc
ggtggaaaccactttattgaagttgatgaagataagaacaaaaataaatacttagtaata
cattctggtagtagaaatttaggaaaacaagttgcagaatactatcaaagtttagcaata
gagttatgtagcggcaaagaaaagttttatgaagaaaaggaagaattaataaacacattt
aaggaacaaggaagaagaaaagaaattcaaaatgaattgaaaaagttaataaaaaaatat
gcggatttaaaaccgaaatatcctaaagacttatgttttttaagtggaaaatatagagaa
gaatatttacatgatatgaaaatttgtccggaatacgctgaaataaatagagaagtaatg
gcaaatataattttaaataaattgataaataaaagtgttgatgattttagtcacttccac
acaactcacaattatataaattttaaagataacataataaggaagggaagcatatcatct
tatgaaggagaaaagctacttattccaataaacatgagagatggaagtatacttgccaca
ggaaaaggaaatgaagattggaacttttcagcacctcatggagctggaagacttatgagt
agaacagaagcaaaggaaaaattaaatcttaatgactttgaaaacactatgaaagatatt
tggactacttctgtatgtgaagaaaccatagatgaggcgccaatggcatataaacctata
gaggatattttaaaatttgtaggtgatacagtagatataattgatgtaattaaaccaata
tataatttcaaatcgaaatag
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