Thermoactinomyces vulgaris: AB849_006055
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Entry
AB849_006055 CDS
T05864
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tvu
Thermoactinomyces vulgaris
Pathway
tvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB849_006055 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvu03019
]
AB849_006055 (rnr)
03016 Transfer RNA biogenesis [BR:
tvu03016
]
AB849_006055 (rnr)
Enzymes [BR:
tvu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB849_006055 (rnr)
Messenger RNA biogenesis [BR:
tvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB849_006055 (rnr)
Transfer RNA biogenesis [BR:
tvu03016
]
Prokaryotic type
tRNA degradation factors
AB849_006055 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
CSD
DUF1918
S1_RRP5
RlmN_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QBK13203
LinkDB
All DBs
Position
1168413..1170743
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AA seq
776 aa
AA seq
DB search
MITEQEIRRFMLEQAYKPLMLEELIEVFGIGEEEREAFVKLLQQMEEDGKIVQTRAKRYG
VPERFNLVRGTLQGTSKGFGFVIPDAAHLDDIYVHLNDMNGALDGDLVLVRIHKRKSEHR
RPEGEIVRVLKRGRDRIVGTFRRLSSHFGFVIPDDKRIPADIFIAHELQMNARDGQKVVV
KLHQIAGRHSAEGEIIEILGHKDDPGVDILSIIRKHGLPEKFPEEVLAEAEQIPGEISEE
EIQGRRDLRERTMVTIDGEDAKDLDDAVSVERLENGNVRLGVHIADVSYYVKEGSALDRE
AYERGCSVYLVDRVIPMLPKRLSNGICSLNPKVDRLTMTCDMEIDPEGNVVDYDIFPSVI
RTNERMTYTDVKKIVVDEDPELIERYRPLVEDFRLMADLAKTLRRKRLQRGAIDFNFAEA
KVVINEKGEPVDIVKRPRTIAEQLIEEFMLKANETVAEHFYRLEVPFVYRIHENPDAEKL
KAFYEFITSFGYSVKGRPDQVKPHALQSLLEKIRGKREEHVISTVMLRSMKQAKYAADCI
GHFGLAAPFYSHFTSPIRRYPDLIIHRIIREVLTKGSLSVERIDELNEILPDAAQQSSIR
ERIAVDAERESQDLKIAEFMMDKIGDEYEGIISSVTSFGIFVELPNTVEGLVHVSYLTDD
YYHYDESSYSLIGERTGRIMRIGDKVRIKVSGVNIDERKIDFELLEHFPGEDVVLKKKGK
KIKAKKASGEKEKKRGKKGKYYEVDREAFQSKTKEQKQHKKKKKKKKKYRNKAKKK
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgatcacagaacaagagattcggcgttttatgttggaacaagcttataagccgctgatg
ctggaagaactgatcgaagtcttcggcattggggaagaagagagggaagcgtttgtcaaa
ctgcttcagcaaatggaagaagatggaaaaattgtgcaaacccgggctaaacggtacggt
gtcccggagcggttcaacctggtgcgcggcactttgcagggaacatccaaaggatttggc
tttgtcattcccgatgcggcccatctagatgatatttatgtccatctgaacgatatgaac
ggcgcgttggatggcgatttggtgctggtgcgcattcataaaagaaaatcggagcaccgg
cggccggaaggggaaattgtccgtgtgttgaaacggggacgggaccgcattgtcggaacg
ttccgccgcttgtcttcccatttcggctttgtgattccggatgataaacggattccggcc
gatatttttatcgctcacgagttgcagatgaacgccagggatgggcagaaggtggtcgtc
aaactgcaccagattgccgggcgccacagcgcggaaggggaaatcatcgagatcctcggg
cataaggatgatccgggagtcgacattctgtcgatcatccgaaaacacggattgccggaa
aaattccccgaagaggtgctggccgaagcagagcaaattcccggggaaatcagcgaagaa
gaaatccagggaaggcgcgacttgcgcgaacgtaccatggtcaccattgacggggaagat
gccaaggatttggatgatgccgtttcggtggaacgtctggaaaacggcaatgtccgtctg
ggcgttcatattgccgacgtgagttactatgtcaaagaaggttccgctttggaccgggaa
gcttatgaacggggatgcagtgtttacctggtggaccgggtgattcccatgcttcccaaa
cgtttgtccaatggcatctgcagtttgaatcccaaagtggaccgcctgaccatgacgtgt
gacatggagattgacccggaaggcaatgtggtcgattatgacatcttccccagcgtgatc
cgtaccaatgagcgcatgacttacaccgatgtcaaaaaaatcgtcgtggatgaagacccg
gaactgatcgagcggtaccggcctttggtggaagacttccgcctgatggccgatcttgcg
aaaacccttcgcagaaaacgtctgcaacggggagccatcgattttaactttgccgaagcg
aaagtggtcatcaatgagaaaggggagccggtggacattgtcaaacgtccccggaccatc
gccgaacaactgatcgaagaattcatgctgaaggccaatgaaaccgtggccgagcatttt
taccgtttggaggttccgttcgtgtaccggattcacgaaaatccggatgccgagaaactg
aaagctttctatgaattcatcaccagctttggctactcggtcaaagggcggccggatcag
gtcaagccgcacgcgctccaatccttgctggagaagatccggggaaaacgggaagagcat
gtcatcagcaccgtcatgttgcgctcgatgaagcaggccaagtatgccgcagattgcatc
ggccactttggtctggcggctcctttttacagtcatttcacctcgccgatccgccggtat
ccggacctcattattcaccggatcatccgcgaagtgttgacaaagggcagcttgtcggtg
gagcggattgatgaattaaacgaaatcctcccggatgcagctcaacaatcttccatccgc
gaacgcattgccgtggatgcggagagagaaagccaggatttgaaaatcgccgagtttatg
atggataagatcggggatgagtacgaaggaatcatcagcagcgtgacctcgttcgggatc
tttgtggaactgcccaacaccgtggaagggctggtgcacgtcagttacctgacggatgat
tactaccattatgatgaaagttcttattccctgatcggcgaacggaccggccggatcatg
cgcatcggggacaaagtgcggatcaaagtgagcggggtcaacatcgacgagcgtaaaatc
gactttgaactgttggaacatttccccggagaggacgtggtcttgaaaaagaaagggaag
aaaatcaaagccaaaaaagcatccggggaaaaagagaaaaagcgcggaaaaaaaggcaag
tattatgaagtggaccgtgaagctttccaatcaaaaacaaaagaacaaaagcagcacaag
aaaaagaagaagaaaaagaaaaaataccgcaataaagcaaagaaaaaataa
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