Thermoactinomyces vulgaris: AB849_008905
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Entry
AB849_008905 CDS
T05864
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tvu
Thermoactinomyces vulgaris
Pathway
tvu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tvu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AB849_008905 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvu03021
]
AB849_008905 (rpoD)
Transcription machinery [BR:
tvu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AB849_008905 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r4
Sigma70_r1_1
HTH_10
Exonuc_VII_L
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QBK14581
LinkDB
All DBs
Position
1730107..1731189
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AA seq
360 aa
AA seq
DB search
MELTLDQAKEQLVEKGKKQGVLSYKMIMEKMSPFDQSSQQMDEFFEHLHDQGIEVVNEED
DSDFDETEVDDEEFVDDDLNVPPGVKINDPVRMYLKEIGRVPLLTAEEEVELAKRIEQGD
EEAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFRKGFKFSTYAT
WWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAEEMGLSPE
KVREIMKIAQEPVSLETPIGEEDDSHLGDFIPDDDAQAPADAAAYELLKEQLKDVLDTLS
EREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggaactaactttggatcaagccaaagaacaattggtggaaaaaggcaaaaagcaaggt
gttttatcttataaaatgatcatggaaaaaatgtctcctttcgaccaaagttcccaacaa
atggacgagttttttgaacacttgcatgatcagggaatcgaagtggtcaatgaagaagac
gattcggattttgatgaaaccgaggtcgatgacgaggagtttgtggatgatgatttaaat
gttccgccgggagttaaaatcaatgaccctgtccggatgtatctcaaagagattggccgt
gttcctttgctgactgcggaagaagaagtcgaattggctaaacggattgaacagggggat
gaagaagccaagcagcggctggctgaagccaacttgcgcctggtggtcagtatcgccaag
cggtatgtcggacggggaatgttgttcttggatttgattcaggaaggaaatatggggctg
attaaagccgttgaaaagtttgatttccgtaaaggatttaaattcagcacgtacgcaacc
tggtggatccggcaagccatcacccgcgccattgccgatcaggcccgcaccattcgaatc
ccggttcatatggtggaaaccattaataaattgattcgcgtgtcccgtcaattgttgcaa
gaactcggccgggagccgacaccggaagaaattgccgaagaaatgggtttaagccctgaa
aaggtacgggaaatcatgaaaattgcccaagaacccgtttcgttggaaacgccgatcgga
gaagaagatgactcccatctgggcgatttcattccggatgatgatgcacaagcaccagcg
gatgccgcggcttatgaattgttgaaagaacagttgaaagatgtgttggataccttgtcg
gaacgggaagaaaatgttttgcgtttacgttttggattggatgatggacgcacccgcact
ttggaagaagtcgggaaagtctttggcgtgacacgggaacggattcgtcagattgaagcc
aaagcacttcgcaaattgcgtcatccaagccgcagcaaacgtttaaaagatttcctcgaa
taa
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