Thermatribacter velox: QBE54_11330
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Entry
QBE54_11330 CDS
T10305
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tvx Thermatribacter velox
Pathway
tvx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tvx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QBE54_11330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvx03400
]
QBE54_11330 (mfd)
Enzymes [BR:
tvx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QBE54_11330 (mfd)
DNA repair and recombination proteins [BR:
tvx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QBE54_11330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
WZL76144
LinkDB
All DBs
Position
complement(2262036..2265149)
Genome browser
AA seq
1037 aa
AA seq
DB search
MDVILRLRTFLKTITQQLAQYQVIHLKSEALIRPLVALFAASWYRLPLFYVVPDRKTQNK
VKILLEELSTLFFDAKASIFTFENAPRQGIILQEQLRNQKPFSIFLLKAEDLSCEIEELE
FFMEHSLLLEKNREYPRTSLLEKLEKIGYQREDFVREPGSFALRGEVLDIFSPQMEHPVR
TYWFANVLEKMKLFTADTQRTFSEVEQALIIPASGRFKKLLLQEVLNKVQGIIFWDDVFY
EKSPLSLPYQVFSGIVPRREHRSVEILSEPLPLFSGRMERFLSYLRENAFQKVLITLPAE
KLESLASILREAAIPFSSEIHAEEKIIIVPSNLPQGFSIPETGLAIFSAREILGFTYPHP
SSGRATPREEGELLREIKEGDYVVHEEHGVGIFKGLKELVVEGVRRVYIEIEYAASDKLY
VPVDNAHLVQKYVGGEGVRPRLQRLGSDEWSKIKERTRKQAGKIARELVELYARRILEGG
HAFSPDTTWQKQLELAFPYLETPDQRKTIEEVKKDMESPKPMDRLVCGDVGFGKTEIAVR
ASFKAVMDGKQVALLAPTTLLSEQHYITFRERMKDFPIRIEVLNRFKSLAQQREIVEQIK
KGQVDIVIGTHRLLQKDIAFKDLGLLIIDEEQRFGVFHKEKLKQLKVGVDVLTLTATPIP
RTLYLSLLGIRDISCIETPPEGRKNIHTLVLPRKKEYIQQAIAQELEREGQIFYVCPRIK
DLMKIAEELREMFPKINFAFAHGRMSGKELEKIMTDFYQGKIPLLLCTTIIEIGLDIPSV
NTLIVDPATHFGLAQLYQLRGRIGRGNREAYAYFFYPRHLDHKARERLNALLEFTETGSG
FKLALRDLEIRGAGNILGPEQHGFIQEVGFHLYSRLLEEEIARLKGEIEQLPSEFPVQIS
LKEEAYLPDYYIFSESERLRYYQKLLKALNEEEIAKIAEEMEDRFGKMPPPVSTLFSLTK
LKYYAKITQVEEIKQEGTRIFIIGPLEALVRLQSAFRESAVATILTRYKDRAALRMPFIG
TKKLAQLLEKVIRNGQT
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggacgtaattctccgactgcggacttttctgaaaaccatcactcagcaacttgcacaa
taccaggttattcacctgaagagcgaggccctgataaggcctttggttgcactctttgct
gcttcttggtatcgtctgccgcttttttacgtggtaccagaccgaaaaactcagaacaaa
gttaaaatcctgctggaagagctgtctacacttttttttgatgcgaaagccagcatcttc
acattcgaaaacgctcctcgacagggcattatcctgcaggaacaacttcgaaatcaaaag
cctttctccatttttttgcttaaagccgaagacctttcctgcgaaatcgaggagctggaa
ttcttcatggaacattctcttttgcttgaaaaaaatcgagaatacccacgcaccagcctg
cttgaaaaactggaaaaaataggttatcagagagaagactttgtaagagaacctggctct
tttgccttacgaggagaggttctggacatattctccccccagatggaacatccagtacga
acctactggtttgccaatgtactggaaaaaatgaagcttttcacagcagacacccagcgt
accttttcggaagtggaacaagcgctaatcattccagccagcggccgctttaaaaaactg
cttcttcaggaagtgctgaacaaagtgcaaggaatcatattctgggacgatgttttctat
gaaaaaagccctttaagtctcccctaccaggttttttccggcatagtaccccggagagag
caccgcagtgttgagatattgagtgagccgctgcccctctttagtggtcgaatggaacgc
tttctcagttacctcagggaaaatgcttttcaaaaagtgttgataacgctgccagcggaa
aagctggaaagccttgccagcattttgagagaggctgccatcccttttagcagtgaaatc
cacgctgaagaaaaaatcattattgtgccttccaaccttccccagggattcagtatccct
gagaccggattggccatattttctgcccgagaaatactgggcttcacctacccccatcct
tcttctgggagagccacgcctcgcgaggaaggagagctgctgcgagaaatcaaggaagga
gactacgtggttcatgaggaacatggtgtcggcatctttaagggtttgaaagaactggta
gtggaaggcgtgcgcagggtttatatagaaattgagtatgctgcttcagacaagctctat
gtccccgtagacaatgcacatctggtgcaaaagtacgttggcggtgaaggggtaaggcct
cgcctgcaacgcttggggagcgacgaatggagcaaaattaaagagcgaaccaggaaacaa
gcaggcaaaatagccagggaattggtcgagctttatgcccgtaggatactggaaggagga
catgctttttccccggataccacgtggcagaaacagctggagctggctttcccctatctc
gaaacacctgaccagagaaaaaccattgaagaagtaaaaaaagacatggagtcacccaaa
cccatggaccgcctggtctgcggagacgttggatttggaaagaccgagattgccgtccga
gcctccttcaaagcggttatggacggaaaacaggtggcacttttggctccaactactctc
ctttccgaacaacactacataaccttccgagaaaggatgaaggattttccaattaggata
gaagtcctgaaccgcttcaaaagccttgcgcagcagcgggaaattgtggaacagattaaa
aaagggcaagtggatatcgtaattggcactcatcgtttgttgcaaaaagacatcgccttt
aaagacctggggcttttaatcattgacgaggaacagcgatttggtgtttttcacaaggaa
aaactgaaacagctgaaagtgggcgtggacgtacttaccttgaccgcaactcccatacct
cgaactctttatctctccttactgggaatacgagacataagctgcattgaaacgccacct
gaggggagaaaaaacattcacactttggtgttgccccgcaaaaaagagtacatccagcaa
gcaatcgctcaggagttggaacgtgagggacaaattttctatgtatgtcctcgcatcaaa
gatttaatgaaaatagccgaagagctgagagaaatgtttcccaaaatcaactttgctttt
gcccacggcagaatgagcggcaaagaactggaaaaaatcatgaccgacttttatcagggc
aaaatccctcttcttctctgtaccaccatcattgaaatcgggctggatatcccctcagtc
aacaccttaatcgtggacccggcaactcactttgggttagcccagctctatcaactacgc
gggagaataggcagaggaaatcgagaagcgtatgcgtatttcttttatcctcgtcacctg
gaccacaaagcccgggaacgcctcaacgcacttcttgaattcactgaaaccggttctggc
ttcaaattggctctacgagaccttgaaattcgcggagctgggaatatacttggtccggaa
cagcacggctttattcaggaagttggatttcacctctattctcgacttctggaagaggaa
attgcacggctaaagggagaaatcgagcagttgccctcagagttcccagttcagatttcc
cttaaggaagaagcttacctacccgattactacattttttctgagtcagaaagactgcgt
tattaccagaagctgctcaaagctttgaacgaggaagaaatagcaaaaatcgctgaagaa
atggaagaccgctttgggaaaatgcctcctccagtctctaccttgttttctctcacaaag
ctcaagtattatgctaaaataactcaggttgaagagattaagcaggaaggaacacgaata
ttcattatcggacctttggaagcattggtcaggttgcaaagcgcttttcgggaaagtgcg
gtagcaacaattcttaccaggtacaaagaccgagctgcgctcagaatgccatttatcggt
accaaaaagttagctcagctcttagaaaaggtgatccgaaatggacaaacatag
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