Thalassolituus hydrocarboniclasticus: HUF19_04525
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Entry
HUF19_04525 CDS
T08537
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
twan
Thalassolituus hydrocarboniclasticus
Pathway
twan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUF19_04525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twan03019
]
HUF19_04525
03009 Ribosome biogenesis [BR:
twan03009
]
HUF19_04525
Enzymes [BR:
twan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUF19_04525
Messenger RNA biogenesis [BR:
twan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUF19_04525
Ribosome biogenesis [BR:
twan03009
]
Prokaryotic type
rRNA helicases
HUF19_04525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
AAA_22
CMS1
AAA_19
PTA_PTB
Motif
Other DBs
NCBI-ProteinID:
UXD86753
LinkDB
All DBs
Position
1027852..1029738
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AA seq
628 aa
AA seq
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MTDSTPTGFASLGLPFSILRTLEELGYEAPSPIQAESIPPLLEGKDVLGMAQTGTGKTAA
FALPLLSRTQADFNSPQVLCLAPTRELAQQVAEAIKTYSKYIPGIGVTAIYGGSDYGSQL
RELKRGPQWVVGTPGRVMDHLRRGTLNLADIKAVVLDEADEMLRMGFIDDVNWILEHTPR
TRQVALFSATMPREIQRVAETHLKDPVEVKIQTKTTTNDKIRQRYWFVAGAHKNDALLRI
AETEEFDAMMVFVRTKQATEEVADFMQANGFKCSPLNGDIPQALREKAVEKLKAGQLDII
VATDVAARGLDVERISHVINYDIPQDTESYVHRIGRTGRAGRNGEAIVFVRGREKRMLRD
IEKATRQSIEEMPLPTAKMVNEKRRERFQAQILDAIHPERNNQYREMIETILSQNPVDAL
DVAAALAALLQGEKSLFINEQTDARMADARERELRNESRSERPSRDRDSRGDSRERGPRS
KALPEERPKPLKGHPEVEMTRYMVGIGYDDGLKPGNLVGAVANEADLDSDYIGHIEIFDN
FAVIDLPEGMPAPTMGKLRKARVCGRPLEIKVYKESEVPQGGAGAPRRAPRRTEGQKDGF
AKKPHRGKPRDNGAPAPGTRAPRKRREA
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattctactcctacaggctttgcgagcctgggcttacctttttctattcttcgt
actctggaagagctgggctacgaagctccgtctccgattcaggccgaaagtattccccca
ctgctggaaggcaaagacgttctgggtatggcccagaccggtaccggtaaaaccgctgcc
ttcgcactgccgctgctgagccgcacccaggctgattttaattcgccacaggttctgtgt
ctggcgccaacccgtgagctggcacaacaggtggctgaagccatcaaaacctacagcaaa
tacattccgggtattggtgttactgctatttatggtggttccgattacggcagccagctg
cgtgaactgaagcgtggtccgcagtgggttgtaggtactccgggccgtgtgatggatcac
ctgcgtcgcggcaccctgaacctggctgatattaaagccgtggttctggacgaagccgac
gaaatgctgcgcatgggctttatcgacgacgtgaactggattctggaacacacgccgcgt
acccgccaggtggctctgttctccgcgactatgccgcgtgaaattcagcgcgttgctgaa
actcacctgaaagatccggttgaagtaaaaattcagaccaaaaccaccaccaacgataaa
attcgtcagcgttactggtttgttgccggtgctcataaaaatgatgccctgctgcgtatt
gccgaaaccgaagaatttgacgccatgatggtgttcgtccgcaccaaacaggcaacggaa
gaagtcgctgattttatgcaggccaacggctttaaatgttcaccattaaacggtgacatt
ccacaggcgctgcgtgaaaaagcggtagaaaaactgaaagccggtcagctcgatattatt
gtagcgaccgacgttgctgcccgtggtctggacgttgaacgtatcagccacgtaatcaac
tacgatattccgcaggataccgaatcctacgttcaccgtattggccgtaccggtcgtgcg
ggccgtaatggtgaagccattgtgtttgttcgtggccgtgaaaaacgcatgctgcgtgac
atcgaaaaagcgacccgtcagagcattgaagaaatgccactgccgaccgccaaaatggtt
aacgaaaaacgccgtgaacgcttccaggcacagattctggacgccattcacccagagcgt
aataaccagtaccgcgaaatgattgagaccattctcagtcagaacccggtcgatgcactg
gacgttgctgccgcactggccgctctgctgcagggtgaaaaatcactgtttattaatgag
cagactgatgcccgtatggccgatgcccgtgagcgtgaactgcgtaacgaaagccgcagt
gagcgtccgtcccgtgaccgtgattcccgtggtgattcacgcgagcgtggcccgcgcagc
aaggcactgccggaagagcgtccgaagccattaaaaggtcatccggaagtggaaatgacc
cgttatatggttggcattggttatgacgacggcctgaagccgggtaacctggttggcgcg
gttgctaacgaagcggacctcgacagtgattacatcggccatatcgaaatttttgataat
ttcgccgtaatcgatttaccggaaggtatgccggccccgaccatgggcaaactgcgtaaa
gcacgtgtttgtggtcgtccgctggaaattaaagtctacaaagagtctgaagtaccgcag
ggtggcgctggtgctccacgccgtgctccgcgtcgtaccgaaggccagaaagacggtttc
gccaagaaaccacaccgtggcaagccacgcgataacggtgctccggcaccgggtacccgt
gctccacgtaagcgtcgcgaagcttaa
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