Thalassolituus hydrocarboniclasticus: HUF19_05560
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Entry
HUF19_05560 CDS
T08537
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
twan
Thalassolituus hydrocarboniclasticus
Pathway
twan03030
DNA replication
twan03430
Mismatch repair
twan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
twan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUF19_05560 (dnaE)
03430 Mismatch repair
HUF19_05560 (dnaE)
03440 Homologous recombination
HUF19_05560 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
twan03032
]
HUF19_05560 (dnaE)
03400 DNA repair and recombination proteins [BR:
twan03400
]
HUF19_05560 (dnaE)
Enzymes [BR:
twan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HUF19_05560 (dnaE)
DNA replication proteins [BR:
twan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HUF19_05560 (dnaE)
DNA repair and recombination proteins [BR:
twan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HUF19_05560 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
UXD86942
LinkDB
All DBs
Position
1255038..1258532
Genome browser
AA seq
1164 aa
AA seq
DB search
MSQGFVHLRVHSEFSLYDSTIRVKKLIGKVAELGMPAVALTDQANMYALVKFYKSAMDAG
VKPVLGADLWLENPDDNTQPFRITALCLNPDGYLGLRELISRAYAKNQHYDKAIVKKEWL
FEKNAGLIILSGGRDGDVGQRVIKGKVSDAEILVREYLQHFPDRFYVELQRTGRPGEEAV
IRAGIAMSARCGVPLVATNDVRFLAAEDFEAHETRVAIGQGYALEDKRRPREYTEQQYFR
SAEEMAELFKDIPSAIDNTVEIAKRCTVEVLLGKYFLPDYPIPEGMSEADFFRKISQVGL
EERLDIILAGLDKNSEEYAEKRKPYDDRLNFELDIIIQMGFPGYFLIVMDFIQWAKDHDI
PVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMENREQVIA
YVADTYGREAVSQIVTFGTMAAKAVVRDVARAQGKSFGLADKLSKLIPGDPGMTLEKALA
SEALLKEFLDEDEEAQEIWEMALKLEGIARQTGKHAGGVVIAPTKLTDFSATACEPDGTG
LVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWALKTINSKRAKENLPPVDISQIPLDDEPS
YKLLKAAQTTAVFQLESRGMKDLIRRLQPDNIEDMIALVALFRPGPLESGMVDDFINRKH
GRAKVAYPHPDFEHESLKETLEPTYGVIVYQEQVMQIAQILAGYTLGGADMLRRAMGKKK
PEEMAKQRDTFRDGAVSQGVDPDLAMKIFDLVEKFAGYGFNKSHSAAYAVVSYQTLWLKQ
HYPAPFMAAVLTSDMQNTDKVVTFIEECREMELELVLPDVNQSQFGFTVNDDGAIVYGLG
AVKGVGEGPIAAIIAARSEGPFKDLFDFCQRVDGKKINKRVLEALVRCGAFDRLESTAPR
SVLMASLEDAIKSAGQTAANEAAGMMDLFGEVQEEEAVGADPYERYRHLRDWSLKERLQG
EKDTLGLFVTGHPFDEYEHEVRKLVPNKLSHLQEAKAPQKLAGLVVDMRVMKNKRGDNMC
FVTLDDRTGRVEVALFSDIYEQVREVVAKDRVLVVEALVSHDDYSGGLKATGRAAMEISQ
ARLTFAKALRIRVDGERSEDEFCNDLKRLLQRMDNGCPVVLDFHNSVARCDIQLGDSWRI
NPSDEQLQELRYAYGDDAVELLFA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagggctttgtacacctccgggttcactccgaattttcgctgtacgacagcacc
atccgcgttaaaaagctgattggtaaagtcgcggagctgggtatgccggcggtcgcgctg
accgatcaggcgaatatgtacgccttggttaagttctacaaaagcgccatggacgccggg
gttaagccggtactgggcgctgacctgtggctggaaaacccggatgacaacacccagccg
ttccgcatcaccgcactctgtctgaaccccgatggttatctggggctgcgcgaactgatc
tcccgtgcttacgccaaaaaccagcattacgataaagccattgttaaaaaagaatggctg
ttcgagaaaaatgccggactgattattttatccggcgggcgcgacggcgatgtcggccag
cgggttattaaaggcaaagtatccgacgccgaaattctggtgcgcgaatatctgcagcac
tttcccgaccgtttttatgttgaattacagcgtaccggccgtcccggtgaagaagcggtt
atccgcgccggtatcgctatgtcagcgcgctgcggtgtgccgctggttgccaccaatgac
gtgcgctttttagccgccgaggattttgaagctcacgaaacccgtgttgctattggtcag
ggctacgcgctggaagataaacgccggccgcgcgaatataccgagcagcagtatttccgc
agtgcagaagaaatggcggaactgtttaaggatattccatcggccatcgacaataccgtc
gaaattgccaaacgctgtacggtagaagtgttactgggcaaatacttcctgccggattat
ccgattccggaaggtatgagcgaggcggattttttccgcaagatttctcaggtcggtctg
gaagaacgtctggatattattctggccgggctggataaaaactcggaagaatatgccgaa
aagcgtaaaccctatgatgaccgtctgaatttcgagctggatattattatccagatgggg
ttccccggttacttcctgatcgtaatggactttattcagtgggccaaagaccacgatatt
ccggtcggtccgggccgtggttccggtgccggctcgctggtggcctacgctcagaaaatt
accgacctcgatccgcttgaatacgatctgctgttcgaacgatttctgaacccggaacgg
gtatccatgcccgacttcgatatcgacttctgtatggaaaaccgtgagcaggtcattgct
tacgtagccgacacctatggccgtgaagcggtatcgcagattgtgaccttcggcaccatg
gcggcaaaagcggtggtgcgcgatgtggcgcgggcgcagggtaaatccttcggtctggcc
gataaattatccaaattaattcccggcgatccgggtatgacgctggaaaaagcactggcg
tcggaagctttgttaaaagagttcctcgacgaagacgaagaagcccaggaaatctgggaa
atggcactcaagctagaaggtattgcccgtcagaccggtaagcacgccggtggtgtggtg
atcgcgccaaccaaattaaccgatttttcggccaccgcctgtgagcctgacggcaccggt
ctggtgacacaattcgataaaaacgatgtggaagaagcgggtctggtgaagttcgacttc
ctcggtctgcgcaccctgaccattatcgactgggcgctgaaaaccattaacagcaaacgc
gccaaagaaaatctgccaccggtcgatatcagtcagattccgctcgacgatgagccgtcg
tataaattattaaaagccgcccagaccaccgcagtattccagctggaatcgcgcggcatg
aaagatcttatccgccgcctgcagccggataatatcgaagatatgatcgcactggtggcc
ctgttccgtccggggccactggaatcaggcatggtggacgactttattaaccgtaaacac
ggtcgcgccaaagttgcttacccgcaccctgactttgaacacgaaagcctgaaagaaacg
ctggagccgacctacggcgttatcgtttatcaggaacaggtaatgcagatcgcccagatc
ctggccggttataccctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaag
ccggaagaaatggccaagcagcgcgacaccttccgtgacggtgcggtttcgcagggcgtt
gatcctgatctggcgatgaaaattttcgacctggtggaaaaattcgccggttacggtttt
aacaaatcgcactccgccgcttatgcggtggtgtcttatcagacactgtggttaaaacag
cattacccggcgccgtttatggctgcggttctgacttccgatatgcagaacaccgataag
gttgtgacctttatcgaagaatgccgtgagatggaactggagctggtactgccggatgtt
aaccagagccagtttggttttaccgtcaatgatgacggtgccatcgtttatggtctgggc
gcggtaaaaggcgtgggtgaaggaccgattgcggccattattgctgcccgcagcgaaggg
ccttttaaagatttattcgatttctgccagcgtgttgacggcaaaaaaattaataagcgt
gtgctggaagccctggtgcgctgcggtgcctttgaccgtctggaaagtacagcaccacgt
tctgtattaatggccagcctggaagatgcgattaagagtgcaggccagacagccgctaac
gaagcggccggtatgatggatttattcggtgaggtgcaggaggaagaagccgttggtgcc
gacccttatgaacgttaccgtcatctgcgcgactggtctttgaaagaacgtctgcagggc
gaaaaagatacgctgggcttatttgttaccggccacccgttcgacgaatacgaacacgaa
gtgcgtaaactggtgccgaataagctgtcacacctgcaggaggccaaagcgccgcaaaaa
ctggccggtctggtggtggatatgcgcgtgatgaagaataaacgcggcgataatatgtgc
tttgttaccctcgatgaccgcaccggccgggttgaagtggcgctgttctcggatatttat
gaacaggtgcgcgaagtcgtggcaaaagaccgcgtgctggtggtcgaagcgctggtgtcg
cacgatgattattccggcggtttaaaagctaccgggcgggcggccatggaaatcagtcag
gcacgcctgacctttgccaaagcgctgcgtatccgtgttgatggtgaacgttcggaagat
gaattctgcaatgatttaaaacgcctgctgcagcgtatggataacggttgcccggtagtg
ctggatttccataactcggtagcgcgctgtgatattcagctgggtgacagctggcgcatt
aatcccagcgatgagcaactgcaggagctgcgttatgcctatggcgatgatgcggtggag
ttattatttgcctga
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