Thalassolituus hydrocarboniclasticus: HUF19_08105
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Entry
HUF19_08105 CDS
T08537
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
twan
Thalassolituus hydrocarboniclasticus
Pathway
twan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUF19_08105 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twan03019
]
HUF19_08105 (rhlB)
Enzymes [BR:
twan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUF19_08105 (rhlB)
Messenger RNA biogenesis [BR:
twan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUF19_08105 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UXD87396
LinkDB
All DBs
Position
1872683..1874140
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AA seq
485 aa
AA seq
DB search
MLKKFLQAVTGKKQPAGKQGSGSKPATQGRGAKKPADLSAKDNKNAKRGGKKSNQPAKDT
HQPAHQPHHAGQADNKKSQKRGKQDQQRPAIDDTPWSIDDFKVEADPAKTRFHDLDLPDS
VMRGIHALGFQYCTPIQAESLPAALRGRDTIGQAQTGTGKSAAFLLTILNRLLTVKPEER
FASEPRALVIAPTRELVMQIGKDAEGLAKYTGLNVVTIVGGMDYEKQRAQLRNHVVDVLV
ATPGRLIDFMRSQDVFLDQVEVLVLDEADRMLDMGFIPDVRRIVRATPTKDQRQTLLYSA
TFNYDVRILIDQWTTDPLEVVIEPEQVATDRVEQRCYLVAESDKYKQLERVLADEKPERC
IIFANRRDLTRNLCDKLNKNGHVAVLLSGEVAQEKRIRTLERFRSGHVRILVATDVAGRG
IHVDGVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSVSFISEDDAFVLPDLEKYLGTKL
ELTQP
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaagaaatttttgcaggccgtaaccggtaagaaacaaccggccggaaaacaggga
tcgggcagtaagcccgcaacgcagggccggggggcgaaaaagcccgcggacctcagcgca
aaagacaataaaaacgccaagcgtggcggtaaaaaaagcaatcagccagccaaagatact
catcagccggcccatcagccccatcatgctggtcaggcggacaataaaaagtcccagaag
cgcggcaaacaggatcagcagcgcccggccattgatgatacgccatggtctattgatgac
ttcaaagtagaagctgatccggctaaaacccgtttccacgatctggatctgccggattct
gtgatgcgcggcattcatgcgctgggcttccagtactgcaccccgattcaggcagaaagt
ctgccagcagcactgcgtggccgcgataccattggtcaggcgcagaccggtaccggtaaa
tcggcggcgtttctgctcaccattctcaaccgtttgctcaccgttaagccggaagagcgt
tttgccagcgaaccccgtgccctggtgatcgcgccgacccgtgaactggtaatgcagatc
ggtaaagacgcagaaggtctggcgaagtacaccggactgaacgttgttaccatcgttggt
ggtatggactacgagaagcaacgcgcacagctgcgcaatcatgtggtcgatgttctggtg
gccacgccgggtcgtctgattgactttatgcgcagtcaggatgtgttcctcgaccaggtc
gaagtgctggtgctggatgaagccgaccgtatgctggatatgggctttattccggatgtg
cgccgtattgtgcgcgctacgccaaccaaagatcagcgtcagacgctgctgtactccgcc
accttcaactacgatgtacgcatcctgatcgatcagtggaccaccgacccgctggaagtg
gtgatcgagcctgaacaggtcgcgaccgaccgggtggaacaacgctgctatctggttgct
gagagcgacaaatacaaacaactggaacgggttctggccgacgaaaaaccggagcgttgt
attatcttcgccaatcgtcgtgacctgacccgtaacctgtgtgacaaactcaacaaaaac
ggccatgtggcggtgctgttgtcgggtgaagtggcgcaggaaaagcgtatccgcacgctg
gaacgtttccgttccggtcacgtccgcattctggtggcaacggacgttgctggccgcggt
attcacgttgacggcgtcagccatgtgatcaactacaccctgccggaagatccggaagac
tacgtacaccgtatcggtcgtaccgggcgtgccggggcaaaaggggtgtcggtcagcttt
atttccgaagacgatgcgttcgtactgccggatctggagaaatatctgggtaccaagctg
gaactgactcagccctga
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