Thalassolituus hydrocarboniclasticus: HUF19_08330
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Entry
HUF19_08330 CDS
T08537
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
twan
Thalassolituus hydrocarboniclasticus
Brite
KEGG Orthology (KO) [BR:
twan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twan03019
]
HUF19_08330 (hrpA)
Enzymes [BR:
twan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HUF19_08330 (hrpA)
Messenger RNA biogenesis [BR:
twan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HUF19_08330 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_30
NACHT
ResIII
SLFN-g3_helicase
T2SSE
nSTAND_NTPase5
ABC_tran
PhoH
DUF4913
SRP54
Motif
Other DBs
NCBI-ProteinID:
UXD89371
UniProt:
A0ABY6AE90
LinkDB
All DBs
Position
1915380..1919216
Genome browser
AA seq
1278 aa
AA seq
DB search
MRRSVQQLKKRSPDDAGTQAQLEKLLQRIQRSQQTVALRSQPLRIAYPEELPVSGKRDEI
LTALRDHQVVVVAGETGSGKTTQLPKICLEAGFGRQGRIAHTQPRRLAARAVAQRIAEEL
GCELGQQVGYQVRFTDQSVDASRVKLMTDGILLAQTQHDRFLNEYDAIIIDEAHERSLNI
DFLLGYLKQLLPQRPDLKIIITSATIDVDRFAQHFADASGKAAPVIEVSGRTFPVEVRYR
SLLRDEEDADDRTLFEGVAEALAELREEDKKSGQHGDVLIFMPGEREIRECAEFLRRAQL
PATEILPLYARLSGADQQKIFKPHGGRRVVLATNVAETSLTVPGIRYVIDSGVARISRYS
YRSKVQRLPVEAISQASANQRAGRCGRTSPGICIRLYEEADFLARSEFTDPEIQRTNLAA
VILQMLHLKLGRLQDFPFIDAPDERFIKDGFNLLQELEAVDADGNMTTLGRQMARLPVDP
RIGRMLLEAKQQQSLREVLIIAAALTVQDPRERPPEKQQAADEKHRLWQHEESDFLSLVN
LWFAYEEQRQETSQAQLRKWCSKHFLSFMRMREWRDTHRQLHVLCKELELKENAEPASYE
AVHKALLAGMLSQIGFKSEGQEYLGARNRKLFIFPASGQYKKKPKWMMTAELVETSKLYA
RTVARIEPQWIEQVGKPLLKYQYFEPHWNAQRGQVTAFEQSTLYGLIVNPRKRVNYALTH
PQEAREVFIQEGLVEQQLRSKLPFYRKNIALLKEVTEYEEKSRRRDLVIDDAWQAEFYRR
HLPQDIPSVRHLERWYEKAPAAEKKALEFTRDQLLSADAAGIGAKDFPAELEWQGMAFPL
SYTFAPGTDNDGVSLSVPVAMLQQVPDAQVEWLVPGFIGEKAAQLIKGLPKAVRKNFVPV
PNTVEAFLRQADASQGGLYIQLLNFLNKTQRPPLELSQLLEVELAPHLRMNIRVMSDGKL
LAQGRDLAALKAQLSDASQQQVLTLAHQDYQRSDISQWDFADLPETIQTQVNGLPVRAFP
CLRLNGQQLELTVEANINDARRAHRTGVSRLIRNALPEQERMLKAHIQKTMASRWLLAKG
LGSQADIANDLLEAAFIQVFVPLDEALPYTEAEYKARLERRAELITHGERLLAQYIEWLQ
LRHTILKRIGGAVSLDRAMAYSDVKAHLQRLLASGFMSRTPWVQLQCYSRYLRAMEYRID
KLQGNLPRDRQSMIEYEALATPYLELLARVDIDDHPQLQEFGWLLEEWRVSLFAQPLGTR
EPVSMKRLQKRWLEIRDI
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcagtgtgcagcagttaaagaagcgctcgccggatgatgccggtacccaggcg
cagctggaaaaactgctgcagcgcattcagcgcagccagcagacggtagcgttgcgctct
cagcctttacgtattgcctatccggaagagctgccggtcagcggcaagcgtgacgagatt
ctcacggcactgcgtgatcatcaggtggtggtagtcgccggtgaaaccggttccggcaaa
accacgcaattacctaaaatctgtctggaagccggttttggccgtcaggggcggattgct
catacccagccacggcgcttggctgcgcgtgcggttgctcagcgaattgctgaagaactg
ggttgcgagcttggtcagcaggtcggttatcaggtgcgctttaccgaccagagcgtcgat
gccagccgggtaaagctgatgaccgatggtattttgctggcgcaaacccagcacgaccgt
tttctcaatgaatacgacgccatcattatcgacgaagcgcacgagcgcagtctgaatatt
gattttttgctcggctatttaaagcaactgctgccgcagcgtccggatctgaaaattatt
attacctcggccaccattgatgttgaccgtttcgctcagcactttgccgatgccagtggt
aaagccgctccggtgattgaagtatccgggcgtacttttccggttgaagtccgataccgc
tcgttattacgggatgaagaggacgcggatgaccgcacgctgtttgaaggcgtggctgaa
gcgctggctgaactgcgcgaagaagataaaaaatccggtcagcatggtgatgtgctgatt
tttatgccaggcgaacgggaaattcgcgagtgcgccgaatttttacgccgcgcacaacta
ccggcgactgaaattctgccgctctatgcgcgcttaagcggtgccgatcagcagaaaatc
tttaagcctcacggtggccggcgggtggtgctggccaccaacgtggcagaaacctcgctg
acggtgccgggcatccgttatgtgattgactccggcgtggcgcgcatcagtcgctacagt
taccgcagcaaagtgcagcggctgccggttgaggctatttctcaggccagtgccaatcag
cgtgccggtcgttgtggccgtacttcgccgggtatctgtatccgtctgtacgaagaagcc
gattttcttgcccgctcagaatttaccgatccggaaattcagcgcacaaatctggctgcg
gttattttgcagatgctgcatctgaaactcggccggctgcaggatttcccctttatcgat
gcccccgacgagcgctttattaaagacggttttaatctgctgcaggaacttgaagccgtt
gatgccgacgggaatatgacaacgctgggccgacagatggcgcgtctgccggttgatccg
cgtattggccggatgttgctcgaagcaaagcagcagcaatcattgcgcgaggtgctgatt
attgcagcggctttaaccgtgcaggacccgcgtgagcggccaccggaaaaacaacaggct
gcggatgaaaaacaccgcctctggcagcatgaagaatccgattttctcagtctggtgaat
ttatggtttgcctacgaagaacagcgtcaggaaacctcgcaggcgcagttgcgtaaatgg
tgcagtaagcattttctgtcttttatgcgcatgcgtgaatggcgcgatacccaccgacag
ctgcatgtattgtgcaaagagctggaattaaaagaaaacgccgagccggccagctacgaa
gccgtacacaaagccttgctggccggcatgctcagccagattggttttaaatcggaaggg
caggaatatctgggcgcccgtaaccgtaaattgtttatttttccggcgtcggggcaatac
aagaaaaagccgaagtggatgatgaccgccgaactggttgaaaccagcaaactgtatgca
cgtacggtggcgcgtatagaaccgcagtggatagagcaggtcggcaagccgctgctgaaa
tatcagtattttgaaccgcactggaatgcccagcgtgggcaggtaaccgcttttgaacaa
agtacgttatacggcttgatcgttaatccgcgcaaacgggttaactatgcgttaacgcat
ccgcaggaagcacgggaagtctttattcaggaaggtctggtagagcagcagttgcgcagc
aaactgccgttttaccgcaaaaatattgcgctgctgaaagaagtcactgagtacgaagag
aaatcccgccgccgtgatctggtcattgacgatgcctggcaggcggagttttatcgccgg
catttaccgcaggacattccgtcggtcagacaccttgaacgctggtatgaaaaagccccg
gcggcggagaaaaaagcactcgaatttacccgcgatcaattactcagtgcggatgcggcg
ggtattggtgcaaaagattttccggccgaactggaatggcagggcatggcttttccgctc
agctatacctttgccccgggtactgataatgatggcgttagcctgagtgtgccggtggcg
atgctgcagcaggttccggatgcccaggttgagtggctggtgcctggctttattggcgaa
aaagccgctcagctgattaagggtttgcccaaagcggtgcgcaaaaactttgtacctgta
ccgaatacggtagaagcctttctgcgtcaggcggatgcctctcagggtggtctgtatatt
cagttgctgaattttcttaataaaacccaacgtccgccgctggagttatcacagctgctg
gaggttgagttagcgccgcatctgcgcatgaatatccgggtgatgtccgatggtaagctg
ctggcgcagggacgcgatctggcggcgttaaaagcgcagctgagtgatgccagtcagcag
caggtactgacgctggcgcatcaggattatcagcgcagcgatatcagccagtgggatttt
gccgatttaccggagactatccagacacaggtgaatggtttgccggtgcgtgcattcccg
tgcctgcgtcttaatggtcagcagctggaattaaccgttgaagccaatattaatgatgcc
cgccgtgcacaccgcacaggtgtcagccgcctgatccgcaacgctctgccggaacaggag
cggatgctgaaagcccatattcagaaaaccatggccagccgctggttgctggcaaaaggt
ctgggcagtcaggctgatattgccaatgacctgcttgaggctgcgtttattcaggtgttt
gtgcctctggatgaagcgctgccttacactgaggctgaatataaagcccgcctggagcgt
cgtgctgagctgattacccacggcgaacggttattggcgcaatacattgagtggctgcag
ctacgtcataccattctgaagcgtattggtggtgcggtcagcctggatcgtgcgatggcc
tacagcgatgtaaaagctcatctgcagcggctgctggcttccggttttatgagccgtact
ccctgggttcagctgcaatgctacagccgttacttacgcgcgatggaataccgcatcgat
aaattgcagggcaatctgccgcgtgaccggcagtcgatgattgagtatgaggcgctggca
acgccttatcttgaattactggcgcgtgttgatatcgatgaccatccgcaattacaggaa
tttggctggctgctggaagagtggcgggtatcgttgtttgctcagccgctgggtacgcga
gagccggtatcgatgaaacgactgcagaagcgttggctggaaatccgtgatatctga
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