Thalassolituus marinus: HUF19_14665
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Entry
HUF19_14665 CDS
T08537
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
twan
Thalassolituus marinus
Pathway
twan02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
twan00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HUF19_14665 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twan03021
]
HUF19_14665 (rpoD)
Transcription machinery [BR:
twan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUF19_14665 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
TMPIT
Motif
Other DBs
NCBI-ProteinID:
UXD88597
LinkDB
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Position
3294777..3296612
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AA seq
611 aa
AA seq
DB search
MSANTQQSRLKELIAKGKEQGYLTYAQVNDHLPDDIANPDQVEDIIRMINDIGIPVSEVA
PDGDSLFMSDAADDAAAEEAAAALALVESDVGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGIREVMSALAYYPGAAETILNAFREAEEDPNRVGDIFSGFIDPSDVDPEPGPQAG
PEAAAAAAEETDDDSTDDDDSSDDSEDSGIDMAEVTRRFDEIRAAHDAMEKSLAKNGRAH
KKTEEALAKLAELFAPIKLTPKYFDSLVNSARDSLDLIRTQERQIMVMMTRKCGMDRKDF
IKEFQGNEVSNEWIDGLIAAGHSYSKKLDTYRLEIFRSQKKIRAVEERVGLSIPEIKEVN
RRVSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTHSESPLDVATSDGLTE
ATRSVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSDHLRSFIDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgaacacgcaacaatcccgtcttaaagaacttatcgccaaaggcaaagagcag
ggttacctgacttatgcccaggtaaacgaccacctgccggacgatattgccaatccggat
caggtcgaagacatcatccgcatgatcaacgatatcggtattccggtatctgaagttgcg
cccgatggtgactcactgtttatgtctgatgccgccgatgacgccgcagcagaagaagcg
gccgctgccctggctctggttgaatccgatgttggccgcaccaccgaccctgtgcgtatg
tatatgcgcgaaatgggtacagtggaactgctgacccgcgaaggcgaaatcgtaatcgcc
aagcgtatcgaagaaggcatccgcgaagtgatgtccgctctggcttactatccgggcgct
gcggaaaccattctgaacgctttcagagaagcggaagaagatccgaaccgcgttggcgat
attttctccggctttatcgatccgtccgatgttgatcctgagccaggcccacaggccggt
ccggaagctgccgcggccgccgcagaagaaaccgacgacgacagcactgatgacgacgac
agcagtgatgacagcgaagacagcggcatcgacatggccgaagttacccgccgtttcgat
gaaatccgtgcagcccatgacgccatggaaaaatccctggccaaaaatggtcgtgcacac
aagaaaaccgaagaagctctggccaaactggctgagctgttcgcgccaattaaactgacg
ccgaaatacttcgattctctggttaacagcgcccgtgattctctcgatctgatccgtact
caggaacgtcagatcatggtgatgatgacccgtaagtgcggcatggaccgtaaagacttc
atcaaagaattccagggtaacgaagtcagcaacgaatggatcgacggcctgatcgctgcc
ggtcacagctactcgaaaaaactggacacctaccgtctggaaattttccgttcgcagaag
aaaatccgcgccgttgaagaacgtgttggtctgagcattccggaaattaaagaagttaac
cgtcgcgtatccatcggtgaagcccgcgcccgtcgcgccaagaaagaaatggttgaggct
aacctgcgtctggttatttccatcgctaaaaaatacaccaaccgtggtctgcagttcctc
gatctgattcaggaaggcaacatcggtctgatgaaagcggtagataaattcgaataccgt
cgtggttataagttttccacttacgccacctggtggattcgtcaggcgattacccgttct
atcgctgaccaggcgcgcaccatccgtattccggtgcacatgatcgaaaccatcaacaaa
ctgaaccgcatctcccgtcagatgctgcaggagatgggtcgtgagccaacgccggaagaa
ctggccgagcgcatggaaatgccggaagacaaaatccgcaaagtactgaagatcgccaaa
gagccaatctccatggaaaccccgatcggtgacgatgaagattcacatctgggcgacttc
atcgaagatactcactccgagtctcctctcgatgtggctacctctgacggcctgaccgaa
gccacccgctctgtgctggccggcctgaccgcaagagaagccaaagtactgcgtatgcgc
ttcggtatcgacatgaataccgaccacacactggaagaagtcggcaaacagttcgacgta
acccgtgagcgtatccgtcagatcgaagccaaggctctgcgcaaactgcgtcacccttcg
cgctccgatcacctgcgcagctttatcgacgagtaa
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