Thalassolituus hydrocarboniclasticus: HUF19_17080
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Entry
HUF19_17080 CDS
T08537
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
twan
Thalassolituus hydrocarboniclasticus
Pathway
twan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUF19_17080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twan03019
]
HUF19_17080
Enzymes [BR:
twan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUF19_17080
Messenger RNA biogenesis [BR:
twan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUF19_17080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UXD89044
LinkDB
All DBs
Position
complement(3823906..3825141)
Genome browser
AA seq
411 aa
AA seq
DB search
MAFADLGITDPLLSTLAALGYAQPTAVQQGAIPAVLAGRDVLAGAQTGTGKTAAFLLPQI
QRLLAQEPAAAKQPRLLVIAPTRELAQQVADSSVRYSQGTRLRTGVAYGGVSLKVQIDAL
AQGLEILVATPGRLLDLLRQEALTLDAVSTLVLDEADRMLDLGFSDEIFAILRALPKERQ
TLFFSATFPKTVKDLAYGMLNDPLLVEVTPQNSTVDAIQQTLYQLDKGKKAAALAFLIGS
GNWQQVLVFVRTKQGADALVKELALDGIKADALHGDKSQGARQRALDDFREGKIRALIAT
DVAARGIDIVALSHVVNFELPFNAEDYVHRIGRTGRAGNDGHAISLVARDEENLLADIEA
LIKRPLPMIWLTGFEPSFDEGLERRGNPRKQRAKAKAKAKAQATYGIRKKK
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcgccgatctgggtattactgacccgcttctttctacccttgccgctctgggt
tatgcacagccaacggcggtgcagcagggcgcgattcctgcggtgctggccgggcgcgat
gtgctggccggagcgcagaccggtaccggtaaaaccgccgcctttctgttaccgcagatc
cagcgtttactggcacaggaacccgcagccgctaagcagccccgcctgctggtgattgcc
ccgacccgtgagctggcgcagcaggtagccgacagcagcgtgcgctacagtcagggcacg
cgcctgcgtaccggtgtggcctatggtggcgtcagcctgaaggtacagattgatgcgctg
gctcaggggctggagattctggtggccacgccagggcggttgctggatctgctgcgtcag
gaagcactgacgctggatgcggtcagcacgctggtgctggatgaagccgaccgtatgctt
gatctgggtttcagtgatgaaatcttcgccattctgcgcgccctgccaaaagagcggcag
acgctgtttttctccgccacttttcccaaaacggtaaaggatctggcgtacggtatgctc
aacgatccgctgctggtggaagtcacgccacagaacagcaccgtcgatgccattcagcag
accctgtatcagttggataaaggcaaaaaagcggcggcgctggcgtttctgatcggctcc
ggcaactggcagcaggtgctggtgttcgtgcgtaccaaacaaggcgccgatgcactggta
aaagaactggcgctggacggtatcaaagccgatgccctgcatggcgataagagtcagggc
gcgcgtcagcgggcgctggacgacttccgcgaaggtaaaatccgcgccttaattgccacc
gacgtagccgcgcgcggtatcgatatcgttgccttaagccatgtggtgaactttgaactg
ccgtttaatgccgaagattacgtgcaccgtatcggccgtaccggacgcgcaggcaacgat
ggtcatgccatcagtctggtggcgcgggacgaagaaaatctgctcgccgatatcgaagcg
ctgatcaaacggccgctgccgatgatctggctgaccgggtttgaacccagctttgatgaa
ggtctggagcgacgcggtaatccgcgtaagcaacgggccaaagccaaggcaaaggccaaa
gcgcaggcgacttacggtatccgcaagaagaaatag
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