Thiorhodovibrio winogradskyi: Thiowin_00394
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Entry
Thiowin_00394 CDS
T09736
Symbol
rnr_1
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
twg
Thiorhodovibrio winogradskyi
Pathway
twg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiowin_00394 (rnr_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twg03019
]
Thiowin_00394 (rnr_1)
03016 Transfer RNA biogenesis [BR:
twg03016
]
Thiowin_00394 (rnr_1)
Enzymes [BR:
twg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Thiowin_00394 (rnr_1)
Messenger RNA biogenesis [BR:
twg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thiowin_00394 (rnr_1)
Transfer RNA biogenesis [BR:
twg03016
]
Prokaryotic type
tRNA degradation factors
Thiowin_00394 (rnr_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
WHD_RNase_R
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
WPL15495
UniProt:
A0ABZ0S4M5
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All DBs
Position
374169..376418
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AA seq
749 aa
AA seq
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MARRKKSQSAKVLDPHREREARKYDKPIPSREFILEILTERGVPMDAAGVAKALDLKDPE
EQLALERRLGAMVRDGQLVRNRRDAFCLVNKKDLIAGRVIGHPDGFGFLKPDEGGDDLYL
YPKEMRALFHGDRIVARVTGRDRRGRLEGAVVEILERNTQSVVGRFYSESGVGFVVPDNK
RISHDIIIPSDRVGSATKGQIVVAEITDQPTKRTQPLGQVLEVLGDHMAAGMETDIAIRA
HDLPVDWPEAVLQQIAGLSEEVPEAAKAERQDLRDLPLVTIDGADARDFDDAVYAERKPK
GWRLLVCIADVSAYVSPGDALDQEGRARGNSVYFPDRVIPMLPEVLSNGLCSLNPQVDRL
CMACELYVNRDGKVTRSRFFEGVMRSAARLTYDQVAAMLEGDPALGEQYAELLPHLHELH
QLFQTLLEARRGRGAIDFDTVETQFVFNDQGRLEAIEPRARNDAHRLIEECMLAANVAAA
RLFERKKMPALFRIHEQPKAEKLSDLREFLAELGLNLPGGDKPTAKDYGTLLDSVRKRAD
FHLIQTVLLRSMQQAMYSSDNVGHFGLAYEGYTHFTSPIRRYPDLVVHRIIKHILAGGGV
AELDYSKPELQQIAEHCSGTERRADEATRDASDWLKCEYMRDKLGEQFDGTIVSVQGFGL
FVELDDVYVDGLVHITALDNDFYHFDPIGHRLNGARTGQVYRLGDRLRVQVAAVNLDERK
IDFVLAPTAKQAEGAKRPRRRGNRKRAVG
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
gtggccagacgcaaaaaatcccaatccgccaaagtgcttgatccgcatcgcgaacgcgag
gcgcggaaatacgacaagcccatccccagtcgcgagtttatcctcgagatcctgaccgag
cgtggggtacccatggatgccgccggcgtggccaaggctctcgacctgaaggatcccgag
gagcagttggcactcgagcgccgcctgggtgccatggtgcgcgatgggcagttggtgcgc
aatcgccgcgatgctttttgcctggtcaacaagaaggacctgatcgccgggcgggtgatt
ggtcaccccgatggttttggtttcctcaagcccgatgagggcggggatgatctataccta
tatcccaaggaaatgcgcgcgcttttccatggtgatcgcattgtcgcgcgggtgactggc
cgcgaccggcgcgggcgactcgagggcgcggtggtggagattctcgagcgcaatacccag
tcggtggtggggcgcttctactccgagagcggcgtgggcttcgtggtgccggataataag
cgcatcagccacgacatcattattcccagcgatcgggtggggtcggccaccaagggccag
atcgtggtggccgagattactgatcaacccaccaagcgcacccagccgctcggtcaggtg
ctggaagtgcttggtgatcacatggccgctggcatggagaccgatatcgccattcgcgcg
cacgatctccccgtcgactggcccgaggccgtgctgcaacagattgctggcttaagcgag
gaggtgccggaagccgccaaggccgaacgccaggatttgcgcgatctgccgctggtgacc
atcgacggggccgatgcgcgcgacttcgacgacgccgtctatgccgagcgtaagcccaag
ggctggcggcttttggtctgtattgccgatgtctcggcctatgtgagcccgggagatgcg
ctggaccaggaaggtcgcgcgcgcggcaattcggtctatttccccgatcgcgtcatcccc
atgctgccggaggtgctctccaacgggctttgctccctcaacccccaggttgatcggctg
tgcatggcctgtgagctttatgtgaaccgcgacggcaaggtcacccgctcgcgctttttt
gaaggcgtcatgcgctccgccgcgcgactgacttacgaccaggtggccgccatgctggag
ggcgacccggcgctgggcgagcagtatgccgagctgctgccccatctgcatgagctgcat
cagttgtttcagaccttgcttgaggcgcgcagggggcgcggcgccatcgactttgacacg
gtcgagactcagttcgttttcaacgaccaaggccggctcgaggccattgagccgcgcgct
cgcaacgacgcccatcggctgatcgaggagtgcatgctcgcggccaatgtcgccgccgcg
cgcctgttcgagcgcaagaagatgccggcgctctttcgcatccatgagcagcccaaggct
gagaagctctccgatctgcgggaatttctcgccgaactggggttgaatctgcctggtggg
gataagcccaccgccaaggattacggcaccctgctggactcggtgcggaaacgggcggat
tttcatctcatccaaaccgtgctgctgcgttccatgcaacaggcgatgtacagctcggac
aatgtcggtcactttggcctggcctacgagggctatacccattttacctcgccgattcga
cgctatccggatctggtcgtccaccgcatcatcaagcacattttggccggtggtggcgtg
gcggagttggattattccaaacccgagctgcagcagatcgccgagcactgctcgggcacg
gagcggcgcgccgacgaggccacccgcgacgccagcgactggctcaagtgcgagtacatg
cgcgacaagctcggcgagcagttcgacggcaccattgtcagcgtgcagggttttggcctg
ttcgtcgagctcgacgatgtctatgtcgatgggctggtgcacatcaccgcgctggataac
gacttctaccacttcgaccccatcggacaccggctcaatggcgcccgtaccggtcaggtg
tatcgcctgggcgaccggctgcgggtgcaggtggcggcggtgaatctcgacgagcgcaag
atcgacttcgtgctggcgcccacggccaaacaagccgagggcgccaagcgaccacggcga
cgcggcaaccgcaagcgtgcggttggttga
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