Thiorhodovibrio winogradskyi: Thiowin_00676
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Entry
Thiowin_00676 CDS
T09736
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
twg
Thiorhodovibrio winogradskyi
Brite
KEGG Orthology (KO) [BR:
twg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
twg03016
]
Thiowin_00676 (rtcB_2)
Enzymes [BR:
twg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Thiowin_00676 (rtcB_2)
Transfer RNA biogenesis [BR:
twg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Thiowin_00676 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
Thiowin_00676 (rtcB_2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WPL15759
UniProt:
A0ABZ0S5G4
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All DBs
Position
complement(704952..706148)
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AA seq
398 aa
AA seq
DB search
MPIRQVFTEGAKPVKVWTDDIDARSQAQLINISTLPFIHHHVAAMPDVHLGIGATIGSVI
ATDKAIIPAAVGVDIGCGMAAARTSLTAEQIDEKALKKLFDQISRDVPVGRAQHKDDRAL
TTAAEPFAAPLKAMTDKHPQLLKAFGRFSNWVNQIGTLGGGNHFIEVCLDESNRVWVMLH
SGSRGIGNAIGHYFIELARRDMERWMIQLPDRDLAYLPEGTEHFDDYVEAVSWAQAYARE
NRDQMMRLVLAALARHLPAFSVTEEVVNCHHNYVDRENHFGANVWVTRKGAIRAREGDLG
IIPGSMGAKSYIVRGKGNPESFCSCAHGAGRRMSRTAAEKQFKPADLEAQTQGVVCRKDK
GVLDEIPGAYKDIDQVMTNQSDLVEVVHTLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcccattcggcaggtattcactgagggcgccaagcccgtcaaggtttggaccgacgac
atcgatgcgcgctcacaagcgcagctcatcaacatctcgaccttgcccttcatccatcat
catgtcgccgccatgcccgatgtgcatttagggataggcgccaccatcggcagtgtgatc
gcgaccgacaaggccatcatcccggccgccgtcggtgtcgacatcggctgcggcatggcc
gccgcgcggacctcgctgacggccgagcagatcgatgaaaaggccctgaaaaagctgttc
gaccagatcagccgcgacgtgccggtcgggcgcgcgcagcacaaggatgatcgcgcgctc
accaccgccgccgagcccttcgccgcgccgctcaaggccatgaccgacaagcacccgcaa
ctgctcaaggcgttcgggcgcttctccaactgggtcaaccagatcggtaccctgggtggg
ggcaatcacttcatcgaggtctgtctggatgagtccaaccgcgtgtgggtgatgctgcat
tctggcagccgcgggattggcaacgccatcggccattacttcatcgaactggcgcgccgc
gacatggagcgctggatgattcagctgccggatcgggatttggcctatctgcccgagggc
acggagcatttcgatgactatgtcgaggccgtctcctgggcgcaggcctatgcgcgcgag
aatcgtgaccagatgatgcgtctggtgctggccgcgctcgcccggcatctgccagcgttc
agcgtcaccgaggaagtggtcaactgccaccataactatgtggatcgcgagaaccacttc
ggcgccaatgtctgggtcacccgcaagggtgcgattcgcgcgcgtgagggggatctgggc
atcatccctggcagcatgggcgcgaaaagctacattgtgcgcggcaagggcaaccccgag
agcttctgctcctgcgcccatggcgctggccgacgcatgagccgcaccgccgccgagaag
cagttcaagccggccgatctggaagcccagacccaaggcgtggtctgtcgcaaggacaaa
ggcgtgctcgatgaaatccccggcgcctacaaggacatcgaccaggtcatgaccaaccag
agcgacctggtcgaggtggtgcataccttgaagcaggtggtgtgcgtgaagggatga
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