Thiorhodovibrio winogradskyi: Thiowin_01695
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Entry
Thiowin_01695 CDS
T09736
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
twg
Thiorhodovibrio winogradskyi
Pathway
twg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
twg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Thiowin_01695 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twg03021
]
Thiowin_01695 (rpoC)
03400 DNA repair and recombination proteins [BR:
twg03400
]
Thiowin_01695 (rpoC)
Enzymes [BR:
twg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Thiowin_01695 (rpoC)
Transcription machinery [BR:
twg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Thiowin_01695 (rpoC)
DNA repair and recombination proteins [BR:
twg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Thiowin_01695 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WPL16721
LinkDB
All DBs
Position
1862381..1866601
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLRVIKQQGQALEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVSDYECLCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVIDPGMTDLTRYQLLTDEQYLEALEANGDEFDARM
GAEAVYELLRTIDLDGDVLRMREEMEQTNSETKIKKLTKRLKLIESLKASGNRPEWMILT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKRMALELFKPFIFSKLQLRGLAATIKAAKKMVERGTPEVWDILEEVIRQHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRERVNAKGEGLKLSGLVEARRAYETG
AADLHARVKVRIREVIREVDGSARENIGLRDTTIGRAMVWEIVPEGLPYDLVNQNLGKKQ
ISRLINRCYRVLGLKDTVVFADQIMYLGFRMATRAGVSIGLDDMEVPEEKPDILAAAETQ
VREIEDQYASGLVTNGERYNKVVDIWSHTNEQVAKSMMRKLGKDKVVDAEGKETEQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVIQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVLEEDCGTDKGLSMTPIIEGGDVVEPLRERIL
GRVAAADVLQPGSDEVLCEAGTLLDEGWVERLEIEGVDQVLVRSAITCQARLGVCAQCYG
RDLARGHRVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVSAVQVKSSGSIRL
HNIKTVQHHSGNLVAVSRSGELTVLDAKGLEKERYKIPYGATVRVNDGDTVEGGQTVATW
DPHTHPVVTEVAGRLRFEDFVDGVTVQSQVDEQTGLTSMVVIDPKQRPSLGKDLRPMVML
LGEGGEELKIAGTDLPARYYLPSGAIVSVTDAADVAVGDILARIPQESSKTRDITGGLPR
VADLFEARKPKDQALMAQATGTVSFGKDTKGKQRLVITTDDGETVEELIPKWRHVNVFEG
ERVERGEVISEGEMNSHDILRLKGVTALAEYLVKEIQDVYRLQGVRINDKHIEVIVRQML
RKVNILNPGDTKLLRGEQVDYATLAAENARAEEEGKHPALYEPLLLGITKASLATESFIS
AASFQETTRVLTEAAVRGSNDSLTGLKENVIVGRLIPAGTGLAYHSERRRRRAAEMAGLG
EQEGAEGVNDEVEQRLKEELNASAGD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatctactgagagtcatcaagcagcagggtcaggcgctggagttcgacgcgatc
aaaatcggcttggcatcgccggatatgatccgttcctggtccttcggcgaggtcaagaag
ccggagaccattaactatcggactttcaagcccgagcgcgaaggcctgttctgcgcaaag
atctttggcccggtcagtgactacgagtgcctgtgcggcaaatacaagcggctcaagcat
cgcggggtggtgtgtgaaaagtgcggggtggaggtcaccctggccaaagttcgccgcgaa
cgcatgggccatattgatctggccagcccggtggcgcatatctggttcctcaagtcgctg
ccctcgcgtatcggtctgctgctggatatgacgctgcgcgatatcgagcgagtcctgtat
ttcgagtccttcgtggtcatcgaccccggcatgaccgacctcacgcgctatcaactgctg
accgatgagcagtacctcgaggcactcgaggccaatggcgatgagttcgatgcccgcatg
ggtgccgaggcggtctatgagctgctgcgtaccatcgacctggatggcgacgtgctgcgc
atgcgcgaggagatggagcagaccaactccgagaccaaaatcaagaagctgaccaagcgc
ctgaagttgattgagtcgctcaaggcgtcgggcaatcgccccgaatggatgattctgacc
gtgctgccggtgctgccacccgagttgcgcccgctggtgcccctggatggcgggcgcttt
gccacctccgatctcaatgatctctaccgccgcgtcatcaatcgcaataaccggctcaag
cggctgctcgatctgatcgcgcccgacattatcgtgcgcaatgaaaagcgcatgctgcag
gagtcggtcgacgccttgctggataacggccggcgcgggcgtgccatcacaggcaccaac
aagcgcccgctcaagtcacttgccgacatgatcaagggcaagcaggggcgcttccggcag
aatctgctcggcaagcgcgtcgactactcgggtcgctcggtcatcgtggtcggcccgacg
ttgcgcctgcatcagtgcggtctgcccaagcgcatggcgctggagttgttcaagcctttt
attttcagcaagctgcaattgcgtggtttggccgcgaccatcaaggccgcgaagaaaatg
gtcgaacgcggcactcccgaggtgtgggacatcctcgaggaagtcatccgccagcatccg
gtgatgctcaaccgcgcgcccaccctgcatcgcctaggtatccaggcattcgagccggta
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgcaccgcctttaatgccgac
ttcgacggtgaccagatggccgtgcatgtgcccttgtcgctggaggcccagcttgaggca
cgcgcgctgatgatggcctcgaacaacatcctctcgccagccaatggcgagcccatcatc
gtgccctcgcaggacgtggtgttggggctttactacatgactcgcgagcgcgtcaatgcc
aagggcgagggtctgaaactctccgggctggtggaagcaaggcgcgcctacgagactggc
gcggcggatctgcatgcgcgagtcaaggtgcgtattcgcgaggtgatccgcgaagtcgat
ggcagcgcgcgagaaaatatcggcctgcgtgataccacaatcggtcgggcaatggtttgg
gaaattgtccccgagggtctgccctatgacctggtcaaccagaacctgggaaaaaagcag
atctcgcgcctgatcaaccgttgctaccgggtgctggggctcaaggataccgtggtcttt
gccgaccagatcatgtatctcggctttcgcatggcgacccgtgccggtgtgtccatcggg
cttgatgacatggaagtgccggaggaaaagccggacatccttgccgccgccgagacccag
gtcagggagatcgaggatcagtacgcatcgggtctggtgaccaatggcgagcgctacaac
aaagtggtcgatatctggtcgcacaccaacgagcaggtcgccaaatccatgatgcgcaag
ctcggtaaggataaggtggtcgatgccgaaggcaaggagaccgagcaggattccttcaat
tccatttacatgatggccgactcgggtgcgcgtggttcggcggcccagattcgccagctt
gctggcatgcgtggcctgatggccaagccagacggctcgattatcgaaacccccattacc
gcgaatttccgcgaggggttgaacgtcatccagtactttatctccacccatggcgcacgc
aagggtctagccgacaccgcgctcaagaccgcgaactcgggttatctcacccggcgtctg
gtcgatgtggcccaggatatggtggtgttggaagaagactgcggcaccgacaaggggctc
agcatgacgcccatcatcgagggcggcgacgtggtcgaacccctgcgcgagcgaatcctc
gggcgcgtggccgcggccgatgtgctccagcccggtagcgatgaagttctgtgcgaggcc
ggaactctgctcgatgagggctgggtggaacgcctggagatcgaaggcgtcgatcaagtc
ttggtgcgctcggccattacctgtcaggcgcgcttgggtgtctgtgcccagtgctacggg
cgcgatctggcgcgcgggcatcgcgtcaatcagggcgaggcggttggggtcatcgccgcg
cagtcgatcggcgagcctggtacgcagttgaccatgcggacgttccacattggtggcgcg
gcttcacgggcagcggcggtcagcgcggtgcaggtcaaatcctctgggtcgatccgcctg
cacaacatcaagacggtccagcatcatagtggcaacctggtggcggtatcgcgttcgggt
gaattgacggtgcttgatgccaagggcctagagaaagaacgctataaaatcccctatggc
gccacggtgcgggtcaatgacggcgatacggtagaaggtggtcagacggttgcgacctgg
gatccgcatacccacccggtggtcaccgaggtggccggtcgcctgaggttcgaggatttt
gtcgatggcgtgaccgtgcagtcgcaggttgacgagcagacgggtctgacctccatggtc
gtgatcgatcccaagcaacgaccgagtttagggaaggacttgcgtcccatggtcatgttg
cttggcgagggtggcgaggaactcaagattgccggtaccgatctacccgcacgctactat
ctgccctctggggccatcgtcagcgtcacggatgccgcggatgtcgcggttggcgacatt
cttgcgcgtattccgcaggagtcgtcaaaaacgcgcgatattaccggcgggttgccgcgc
gtggcggatttgttcgaggcgcgcaagcccaaggatcaggcgctcatggcccaggccacc
ggcaccgtcagcttcggtaaggataccaagggcaagcagcgactggtgatcaccaccgat
gatggcgagacggttgaggaactgatcccgaaatggcgccacgtcaatgtgttcgagggc
gaacgcgtggagaggggcgaggtcatctccgaaggcgagatgaactcccatgatatcctg
cggctcaagggggtgaccgcgctggcggagtacctggtcaaagagatccaggatgtttat
cgcctgcagggtgtgcgcatcaatgacaagcacatcgaggtgatcgtgcgccagatgctg
cgtaaggtcaacattcttaatcctggtgacaccaaattgctgcgtggggaacaagtcgac
tacgcgacgcttgcggcagagaatgctcgtgccgaggaggaaggcaagcatccggcgctc
tatgagccgttgctacttggcatcaccaaggcatcattggcgaccgagtcctttatttcc
gcggcatccttccaggagactacccgggtgctgaccgaggccgcggtgcgaggttccaac
gacagcctgacggggctgaaggagaacgtaatcgttggacgtctgattccagccggcaca
ggtttggcctatcacagcgaacgccgtcgcaggcgcgccgctgaaatggctggactgggc
gagcaggaaggagcagagggcgtcaacgacgaggtcgagcagcggttaaaagaagagctc
aatgcatcggctggcgactag
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integrated database retrieval system
