Thiorhodovibrio winogradskyi: Thiowin_02626
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Entry
Thiowin_02626 CDS
T09736
Symbol
rnr_2
Name
(GenBank) Ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
twg
Thiorhodovibrio winogradskyi
Brite
KEGG Orthology (KO) [BR:
twg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
twg03016
]
Thiowin_02626 (rnr_2)
Enzymes [BR:
twg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Thiowin_02626 (rnr_2)
Transfer RNA biogenesis [BR:
twg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Thiowin_02626 (rnr_2)
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Ortholog
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
WHD_RNase_II
DUF2442
PglZ_1st
Motif
Other DBs
NCBI-ProteinID:
WPL17601
UniProt:
A0ABZ0S999
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Position
complement(2845182..2847032)
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AA seq
616 aa
AA seq
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MSIHQGNPRIDALVLYKSRPARVSALDDKIELELEGGQTKRVRLKDVVLLHPGPLRRLAD
LTAGLDRLAGQSGSFEEAWELLDGESTTVTELAELLYGESSPEAVWASWQLVMEGPLFEG
EPEAIRPRAAEVIAQEREQREAKARAEQEWADFVARIEKRVLLPEDGERLREVERMVYQQ
SEHSRILKHFDVAEQPAKAHAFLLRVGHWPAEHNPYPKRFGVALAAPALPVPELAEEPRL
DLTALPAYAIDDAGNQDPDDAISLDGDRVWVHVADVAALVTPGSELDLEARARGATLYLP
EGAITMLPEAATAALGMGLKEISPALSFGFRCDEQGELHDIDVRPSWVRVERLSYGETEQ
RLSEEPFASLSRLVERFRARRAANQAARIDLPEVNLRLSDGQVIIEPMVRLAARELVTDA
MLMAGEATARLCQEREIAIPFAVQPPPERIEQPESLSGMHAYRRFFKPSRTTVEPGAHFG
LGLPLYTRTTSPLRRYADLLVHQQLRAHLRGEPPLDASDLATRASQAEVAGAAVRKTERL
SNQHWKLVYLRAHPGWRGRGVVVAREERRTVVLIPELALETRLRAKQELQLDAELDLLLT
SVDLPELEGRFRLVDG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
ttgtccattcatcaaggtaacccgcgcattgatgcgctggttctctataaaagccgccca
gcgcgggtcagtgcgctcgatgacaaaattgagcttgagcttgagggaggccagaccaag
cgcgtgcgtctgaaggatgtcgtgctcttgcatcccggcccgctgcggcggctcgccgat
ctgacggccggactggatcggctagctgggcagagtggaagtttcgaggaggcttgggaa
ctgcttgatggcgaaagtaccacggtgactgagctggccgaattgctgtatggcgagtcc
tcccccgaggctgtctgggcgagctggcagttggtgatggaagggcccttgtttgaaggc
gagccagaggcgattcgcccacgcgcggccgaggtgatcgcgcaggaacgtgaacaacgc
gaggccaaggcccgcgcggagcaggagtgggcggactttgtcgcgcgcatcgaaaaacgg
gtcttgttgcccgaggatggcgagcgtctgcgcgaggtcgagcgtatggtgtatcagcaa
agcgagcactcgcggattctcaagcatttcgacgtggccgagcagccagcgaaggcgcat
gcctttctgctgcgcgtcggccattggccggcggagcataatccctatcccaagcgcttt
ggtgtggcgctggcggcgcccgctttgccggtgcctgaactggccgaggagcctcgcttg
gatttaaccgcgctgccggcctacgccattgacgacgccggcaatcaagaccccgacgat
gccatcagcttggatggggaccgcgtctgggtgcatgtggccgatgtggcggccttggtg
acgccgggcagcgagctggatctcgaggcgcgcgcgcggggtgccaccctgtatctgccc
gaaggcgccatcaccatgctgcccgaggccgcgaccgcggctctgggcatgggcctgaaa
gagatttccccggcgctgtcctttggctttcgctgtgacgagcagggcgaactgcacgac
attgatgttcggccaagctgggtgcgggttgaacgcctgagctacggcgagaccgagcaa
cggctgagcgaggagccattcgcatccttgtcgcggctggttgagcgctttcgtgcccgg
cgcgcggccaatcaagcggccagaatcgatctgccagaggtcaatttacgcctgagcgac
ggccaggtgatcattgaacccatggtgcgcctggccgcgcgggagttggtgaccgacgcc
atgctgatggcgggcgaggccacggcgcgcctttgtcaggaacgtgagatcgccattcca
ttcgcggttcagccaccgccagaacgcatcgaacagccggagagtctctctggcatgcac
gcctatcgacgttttttcaagccgtctcgaacaacggtcgagccgggcgcgcattttggg
ctggggctgccgctctatacgcggaccaccagcccgttgcgtcgctacgccgatcttctg
gtgcatcagcagctgcgcgcgcatctgcgcggtgagccgcccttggacgcgagtgacctg
gccacgcgcgccagtcaggccgaggtggccggggccgcggtgcgcaagaccgagcggctg
tcaaatcagcactggaagctggtctatctgcgcgcgcatcccggctggcgaggtcgggga
gtggtggtggcgcgcgaggagcggcgcacggtggtgctgatcccggaactcgcgctcgag
acccggctgcgcgccaagcaagagttgcagcttgatgccgagctggacctcctgctgacc
tccgtggatttacctgagttggaggggcgcttccggttggtcgatggttga
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