Thiorhodovibrio winogradskyi: Thiowin_04753
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Entry
Thiowin_04753 CDS
T09736
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
twg
Thiorhodovibrio winogradskyi
Pathway
twg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
twg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Thiowin_04753 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twg03400
]
Thiowin_04753 (sbcB)
Enzymes [BR:
twg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Thiowin_04753 (sbcB)
DNA repair and recombination proteins [BR:
twg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Thiowin_04753 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Thiowin_04753 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Thiowin_04753 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
GAT
Motif
Other DBs
NCBI-ProteinID:
WPL19616
LinkDB
All DBs
Position
complement(5097040..5098557)
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AA seq
505 aa
AA seq
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MAKAATRLPPPRTFYWHDYETWGSDPRCDRPCQFAGLRTDAHLNELGPAEPPLVRFCRPA
TDFLPSPDACLITGLTPQQAEREGVIEAVFAAEIQQQLARPGTCSVGYNSIRFDEEVSRF
LFYRNFLDPYAHTWRHDTSRWDLIDVARLAHALRPDGIDWPRQPDGAPSFKLEHLSVAND
IPHQGAHDALADVRATLALAKRLRAAQPRMFDYALALRDKERVRELLEPGQPVLHVSAKY
AAERGCIAPIMVVAPASTEDKNAVIVWDLREDPSELFGLSPEDIRQRVFTRAEDLPPGVR
RLPLKKLRLNASPMVAPMSTLSPVAAERWDIDPVRVEQHWNAFAADAKAVARVAQALHTA
FARSDTAGALDPDQALYGGFLTDADQRLIAQVRDMTPQALAQAHLPFKDPRLPVLLLRYR
ARNWPESLGAREAEQWEAWRQQRLCEEGQGCGLSPRQYRQRLAELRAEHAADPRRLRLLS
ELEDWPQRINVTHGEDRPLVMAPGQ
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
gtggccaaggccgcgacaaggcttcctccgcctcggaccttctactggcacgactacgaa
acctggggctccgaccccaggtgtgatcgtccctgtcagttcgccgggctgcgcacggac
gcgcatctgaacgaactcggccccgccgaaccgccgctggtgcgcttctgccggccggca
accgactttctgccttcccccgacgcctgcctaatcaccggtctgacacctcagcaggcc
gagcgcgaaggcgtgatcgaggccgtctttgccgctgagatccaacaacaactcgcgcgc
cccggcacctgctcggtgggctacaacagcatccgcttcgatgaggaagtctcgcgcttt
ctgttctatcgcaactttctcgatccctatgcccacacatggcgccatgacacctcgcgc
tgggatctgattgacgtggcgcgcctggcccatgcgttgcgcccggatggcattgactgg
ccgcgacagccggatggcgcgccatcctttaagctcgagcacctgagcgtcgccaacgac
attcctcaccaaggcgcgcatgatgccctcgccgatgtacgtgccaccctggccctagcc
aagcgcctgcgcgccgcgcagccgaggatgttcgactacgcgcttgcactgcgtgacaag
gaacgggtgcgcgagttgctggaaccggggcagcccgtgctacatgtctccgccaaatat
gccgccgagcgtggctgcatcgcgccgatcatggtggtggccccggcaagtaccgaggac
aaaaacgccgtcatcgtctgggatctgcgcgaggatccgagcgagttgttcggactctca
cccgaggacattcgccagcgggtatttacccgtgccgaggatctgccgcccggagtcaga
cgcctgccactgaagaaactgcgtctgaatgcctcccccatggtggcgcccatgtcaacg
ctcagtccggtcgctgccgagcgatgggatattgatcctgtccgggtggaacaacactgg
aatgcatttgccgccgatgccaaggcagtcgcgcgggtggcccaagccctacacacggcc
tttgcccgctccgatacggctggcgcgctagatcccgaccaggcgctctacggtggtttc
ttgacggacgccgatcagcggctgatagcgcaagtccgcgacatgacgccccaagcgctt
gcacaagcgcatttgcccttcaaagacccacgcttgccggtgttattgttgcgctatcgg
gcgcgcaactggcccgagagcctcggcgccagggaggccgaacaatgggaagcctggcgc
caacagcgtttgtgcgaggaaggccaggggtgcggcttgagtccgcgccaataccgccaa
cgattagccgagctgcgcgcggagcatgccgcggatccgcgccggctgcgtctgttgagc
gaactcgaggactggccccaaaggatcaatgtgacgcatggtgaagataggccgctcgtg
atggcgcctggacaataa
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