Tropheryma whipplei Twist: TWT_182
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Entry
TWT_182 CDS
T00116
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
twh
Tropheryma whipplei Twist
Pathway
twh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
twh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TWT_182 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twh03400
]
TWT_182 (trcF)
Enzymes [BR:
twh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TWT_182 (trcF)
DNA repair and recombination proteins [BR:
twh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TWT_182 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AAO44279
UniProt:
Q83N19
LinkDB
All DBs
Position
228490..232365
Genome browser
AA seq
1291 aa
AA seq
DB search
MPGILFNIAWPYKSPADNLTCPTNSTHTYPHKIPLHGQLDKGFLNLLAAIEAFIPTGFAA
TACPGGFSACKVASLVGDVDSLLVILPSEDACFTDTLRTYLPESIILNFPEWDTLLHEQI
SPSPERVSARMEALHKISLFRKNNKRAKNAQTSKTLHDIGILEDNLPTIHQKLVVVASIK
AFMQPIISDGNPPCLYFHTGGEYELSEIANILVAMSYSRTDLVGARGEFAIRGGILDIYP
PTEKHPIRIEFFGRQLESMRHFRVSDQRSIGPYVSNNAHVGMFAQYQDNSVCKCNVSLSS
NPHRCASHLSINNTYKPSAVMAPASEALIVYPTSEFPEEDQINNITPKSLLHFMPGKSTV
VVIKCEQLTSKIEQLINTNREFSEAFCTPDAFSATNKYARNNHDGDNTLDGIAEKINYYT
LEGLRHFAADLGIGWTDLSGFNSEDEKSLITANPDFSGYSVFDHIRNLQKSGWQIVLAST
NNRVYPTLDEYGIDYLILSANTDYSSFEECRECSTRQESPQVMCTPSITQSCTHDRTGAQ
QKSYISDLFFKQADPDAVDSGLIKHRVVVIDSYIQEGFSVPTKSFTLIGEHELFGKTTLQ
KAPRISRRAIDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDAPEQEYLILEYAKNRLGV
ADKLYIPTDQLSMISKYIGSDRPTLSRIGGSDWALTKSRARKAISSIALDLVKLYSRRSI
TKGYAFSPDTPFQTHFENEFLYTETRDQEKTIVAVKADMENSKPMDRIISGDVGFGKTEI
AMRAAFKAVQDNKQVAVLVPTTLLARQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTIC
GISSGGIDIVIGTHMLLNKKIQFKDLGLLIIDEEHRFGVNHKEAIKKLKIGIDILAMSAT
PIPRTLEMSLMGIKEISTLSTPPENRMPILTHVGPYRDKQVIAAVRREIIRGGQVFYIHN
DTATISRVAQRLEQLIPEARVVSAHAKLAERMLEKTVIDFWEGKYDILVCTTIIETGLDN
ANANTIIIDSAENYGLSQLHQLRGRVGRGTKRAYAYLFYTSTLKDTAYKRLEAIARNNHL
GAGAQIAMKDLELRGAGSLLGHAQSGHIASVGFDLYIRMVTDAISNFKGEQSRTNNLRLE
IPVDASIPKAYVDSERLRIELYKKISEALSDADIKDIGDEILDRFGNLPSQVINLLELAR
LRILASSRGIDLITLKSDFRQGGDVVTVSPVSFSDTAHQNLLRDGQFSFICYRNSKLSAC
INRSSSEHSGYSEHSAQIINSIRHFIITSCN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgcccggtatcttattcaatatcgcctggccatacaagtcccctgccgataatctcact
tgccctactaacagtacgcacacatatccacataaaatacctttgcacggtcaacttgat
aagggattcttgaatttactggcagccatagaggcatttattccaacagggtttgctgca
acagcatgcccgggcgggttttccgcgtgtaaggttgccagtcttgttggtgatgttgat
agcctacttgtaattctcccgagtgaagatgcttgcttcaccgacacactgcgcacatac
ttgcccgagtctattattctgaattttccagaatgggacaccctattacacgagcaaatc
agcccgagtcctgagcgtgtttctgccagaatggaggcgttacacaagatctccttattc
cgtaaaaataataagcgtgctaaaaacgcccagacaagcaaaaccttgcatgacattggc
attctggaagataatctgcccaccatacaccaaaagcttgttgtcgttgcatctatcaag
gcattcatgcagcccattatttcggacggaaatccgccctgtctttactttcatactggg
ggcgagtatgaattgtcagaaattgcaaacattcttgttgcaatgtcgtattcaagaact
gatcttgttggggcaaggggtgagtttgcaataagaggtggcatcctcgacatctatcct
cccaccgagaaacacccgatcagaatcgagttctttggtcggcagctcgagagtatgcgt
cacttccgtgtttcagatcaacgctcaatagggccttatgtatccaataatgctcacgtt
ggcatgtttgcacaatatcaggataattcggtatgtaagtgtaatgtctcattaagctct
aatccgcatagatgcgcctcacatttatccattaacaatacatataaacccagtgcggta
atggccccagcttcagaagcacttattgtatatccaacaagtgagtttcctgaagaagat
caaatcaataacatcaccccaaaatccctgctgcattttatgcctggaaaatctacagtc
gtagttataaaatgcgaacaattaacgtctaagatagagcagctcataaacacaaaccgg
gagttttccgaggctttttgtacgccagacgctttttctgcaactaataaatatgctcga
aataatcatgatggtgataataccctcgacggtattgccgaaaaaataaattactacacc
ttagaaggacttcgtcattttgcagcggatctaggcatcggttggactgacttatccggt
tttaacagcgaagatgaaaaatcacttattacggccaatccagatttttctggatattcg
gtatttgatcatattcgaaacctacaaaaatctggatggcaaattgtgctcgcttcaaca
aataacagggtatatcccacgctcgatgaatacgggattgattacctgatattgtcagcg
aacactgattattcctcgtttgaggagtgcagggagtgttctacaagacaggagagtcca
caggtaatgtgcacccctagcattacacagagctgcacgcatgaccgcacaggcgcgcag
caaaaatcgtatatatctgatttgttttttaaacaagcagatcctgacgcagttgattca
gggctaataaagcatagggttgttgtaattgattcgtatatacaagagggtttttcagtc
ccgacaaaatccttcacactgattggcgaacatgaattatttggcaaaaccacactccaa
aaagccccgcgcatttcacggcgtgcaatagatccgataaatctcgcaattgatgactat
gtggtgcatgaaatacatggaattgcccgtttcaagggaatgtgctcgcggcgaccaaag
cacgatgcccccgagcaggaataccttattcttgaatatgcaaaaaacaggcttggcgta
gcagacaagctttatattccaaccgatcagctgtcaatgataagtaagtatattggctct
gataggccaactttatcgaggattggcggaagcgactgggctctaacaaaatcccgtgca
cgtaaagcaatcagtagtattgcgcttgatcttgtaaagctttattctcgccgttcaatc
acaaaaggatacgcattttcgcctgataccccatttcaaacacattttgaaaatgagttt
ttatacacagaaacacgggatcaggaaaaaacaattgtcgcggtaaaggcagatatggaa
aattccaaacctatggatcgcataataagcggtgatgttggttttggaaaaacagagatt
gcaatgcgtgcagcgttcaaggcagtgcaggacaacaaacaggtggctgttctagtgcca
acaactctccttgcgcgccaacacatccaaactttttgtgagcgttttgataagtggccg
gtaacaattgcctccctcagtcgctttcagtcaaaatctgaaatacagaaaaccatttgc
gggatttcatccggtggaattgatattgtaattggcactcatatgctcttgaataagaaa
atacagttcaaggatcttggtcttttgattattgacgaagagcaccgctttggtgtaaat
cacaaagaagctataaaaaaactaaaaataggtattgacatattggcaatgagcgccacg
ccaattccgcgcacacttgaaatgagtctgatgggcataaaagagatctcgactctatca
acaccccctgaaaaccgcatgccaatcttgacccatgtcggaccatacagagacaaacag
gttattgcagcagttaggcgagagataattcgtggcggacaggtcttctacatccataac
gataccgcaacaatatcaagggtggctcagcgacttgaacaattaattccagaagcccga
gtggtttcggcacatgcaaaattagccgagcgaatgctagaaaaaacggttattgatttc
tgggagggaaagtatgacattcttgtttgcacaacgataatcgaaacaggtcttgataac
gcaaatgcaaacacaataattatcgattctgcagaaaattacggcctcagccaattacat
cagctcaggggtcgtgttggacgaggaactaagagggcatatgcgtatcttttttatact
tctacactgaaagatactgcatacaaacgactggaggcaatagctagaaataaccacctc
ggtgccggtgcacaaattgcaatgaaagaccttgagcttcgcggtgccggcagtcttctg
gggcatgcacagtcagggcatattgcatctgttgggtttgatctttatatcaggatggtg
actgatgcgatttccaacttcaagggagagcagagtcggacaaataatttacgccttgaa
ataccggttgatgccagtattcccaaagcgtatgttgatagtgaacgcctgcgaatcgag
ctttataaaaagatttctgaggcattatctgatgcggatataaaagatattggagacgaa
atactggatcgatttggcaatcttccgagtcaggtaataaacctcctggagttagctaga
ttgcgcatactcgcatcttctcgggggatagacctcattacccttaaaagtgattttcgc
caagggggtgatgttgttaccgtatcaccagtaagctttagtgataccgcacaccagaat
ctattacgggatgggcaattctcatttatttgctacaggaattcaaaactttctgcttgt
attaaccgctcttcttctgagcacagtggttattctgagcacagcgctcagataataaat
tcaattagacattttattattacctcttgtaattga
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integrated database retrieval system
